Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF902

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.05 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF901 and GFF902 are separated by 52 nucleotidesGFF902 and GFF903 are separated by 55 nucleotidesGFF903 and GFF904 are separated by 107 nucleotides GFF901 - Inosose isomerase (EC 5.3.99.-), at 82,723 to 83,538 GFF901 GFF902 - Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1), at 83,591 to 84,475 GFF902 GFF903 - FIG138315: Putative alpha helix protein, at 84,531 to 85,082 GFF903 GFF904 - TldE protein, part of TldE/TldD proteolytic complex, at 85,190 to 86,530 GFF904 Position (kb) 83 84 85Strain fitness (log2 ratio) -1 0 1at 82.705 kb on - strandat 83.798 kb on - strand, within GFF902at 83.906 kb on - strand, within GFF902at 83.909 kb on - strand, within GFF902at 84.171 kb on - strand, within GFF902at 84.238 kb on + strand, within GFF902at 85.172 kb on + strandat 85.172 kb on + strandat 85.173 kb on - strandat 85.342 kb on - strand, within GFF904at 85.381 kb on + strand, within GFF904at 85.381 kb on + strand, within GFF904at 85.389 kb on - strand, within GFF904

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
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82,705 - -0.1
83,798 - GFF902 0.23 +0.5
83,906 - GFF902 0.36 +0.8
83,909 - GFF902 0.36 +0.5
84,171 - GFF902 0.66 -0.2
84,238 + GFF902 0.73 -0.3
85,172 + +0.7
85,172 + +0.9
85,173 - +0.2
85,342 - GFF904 0.11 +0.4
85,381 + GFF904 0.14 -0.4
85,381 + GFF904 0.14 +0.1
85,389 - GFF904 0.15 +0.2

Or see this region's nucleotide sequence