Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24335

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24330 and AO353_24335 are separated by 390 nucleotidesAO353_24335 and AO353_24340 are separated by 106 nucleotides AO353_24330: AO353_24330 - cystathionine beta-lyase, at 5,351,786 to 5,352,955 _24330 AO353_24335: AO353_24335 - L-asparagine permease, at 5,353,346 to 5,354,830 _24335 AO353_24340: AO353_24340 - TetR family transcriptional regulator, at 5,354,937 to 5,355,500 _24340 Position (kb) 5353 5354 5355Strain fitness (log2 ratio) -3 -2 -1 0 1at 5352.365 kb on + strand, within AO353_24330at 5352.365 kb on + strand, within AO353_24330at 5352.365 kb on + strand, within AO353_24330at 5352.428 kb on - strand, within AO353_24330at 5352.431 kb on + strand, within AO353_24330at 5352.431 kb on + strand, within AO353_24330at 5352.462 kb on - strand, within AO353_24330at 5352.479 kb on + strand, within AO353_24330at 5352.480 kb on - strand, within AO353_24330at 5352.513 kb on + strand, within AO353_24330at 5352.513 kb on + strand, within AO353_24330at 5352.514 kb on - strandat 5352.514 kb on - strand, within AO353_24330at 5352.524 kb on - strand, within AO353_24330at 5352.545 kb on + strand, within AO353_24330at 5352.546 kb on - strand, within AO353_24330at 5352.560 kb on + strand, within AO353_24330at 5352.560 kb on + strand, within AO353_24330at 5352.561 kb on - strand, within AO353_24330at 5352.561 kb on - strand, within AO353_24330at 5352.561 kb on - strand, within AO353_24330at 5352.573 kb on + strand, within AO353_24330at 5352.574 kb on - strand, within AO353_24330at 5352.636 kb on + strand, within AO353_24330at 5352.636 kb on + strand, within AO353_24330at 5352.637 kb on - strand, within AO353_24330at 5352.686 kb on + strand, within AO353_24330at 5352.686 kb on + strand, within AO353_24330at 5352.687 kb on - strand, within AO353_24330at 5352.697 kb on + strand, within AO353_24330at 5352.697 kb on + strand, within AO353_24330at 5352.697 kb on + strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.698 kb on - strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.801 kb on + strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.802 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.806 kb on - strand, within AO353_24330at 5352.841 kb on + strandat 5352.842 kb on - strandat 5352.877 kb on + strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.878 kb on - strandat 5352.926 kb on + strandat 5352.945 kb on + strandat 5352.992 kb on + strandat 5352.997 kb on - strandat 5352.999 kb on + strandat 5353.482 kb on + strandat 5353.498 kb on + strand, within AO353_24335at 5353.891 kb on - strand, within AO353_24335at 5353.906 kb on - strand, within AO353_24335at 5354.070 kb on + strand, within AO353_24335at 5354.070 kb on + strand, within AO353_24335at 5354.071 kb on - strandat 5354.165 kb on + strand, within AO353_24335at 5354.213 kb on + strand, within AO353_24335at 5354.332 kb on - strand, within AO353_24335at 5354.420 kb on + strand, within AO353_24335at 5354.420 kb on + strand, within AO353_24335at 5354.420 kb on + strand, within AO353_24335at 5354.421 kb on - strand, within AO353_24335at 5354.421 kb on - strand, within AO353_24335at 5354.493 kb on + strand, within AO353_24335at 5354.708 kb on + strandat 5354.709 kb on - strandat 5354.709 kb on - strandat 5354.834 kb on - strandat 5354.855 kb on + strandat 5354.929 kb on + strandat 5354.943 kb on - strandat 5354.995 kb on - strand, within AO353_24340at 5355.109 kb on + strand, within AO353_24340at 5355.160 kb on + strand, within AO353_24340at 5355.521 kb on + strandat 5355.523 kb on + strandat 5355.682 kb on + strandat 5355.709 kb on + strandat 5355.781 kb on + strandat 5355.781 kb on + strandat 5355.781 kb on + strandat 5355.781 kb on + strandat 5355.782 kb on - strandat 5355.819 kb on + strandat 5355.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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5,352,365 + AO353_24330 0.49 -0.4
5,352,365 + AO353_24330 0.49 +0.3
5,352,365 + AO353_24330 0.49 +1.6
5,352,428 - AO353_24330 0.55 -0.2
5,352,431 + AO353_24330 0.55 +0.3
5,352,431 + AO353_24330 0.55 -0.6
5,352,462 - AO353_24330 0.58 +1.1
5,352,479 + AO353_24330 0.59 -0.8
5,352,480 - AO353_24330 0.59 +0.2
5,352,513 + AO353_24330 0.62 +1.1
5,352,513 + AO353_24330 0.62 -0.2
5,352,514 - -1.4
5,352,514 - AO353_24330 0.62 -1.3
5,352,524 - AO353_24330 0.63 -0.6
5,352,545 + AO353_24330 0.65 -0.7
5,352,546 - AO353_24330 0.65 +0.6
5,352,560 + AO353_24330 0.66 -0.8
5,352,560 + AO353_24330 0.66 -1.4
5,352,561 - AO353_24330 0.66 +1.1
5,352,561 - AO353_24330 0.66 +0.2
5,352,561 - AO353_24330 0.66 -1.4
5,352,573 + AO353_24330 0.67 -0.6
5,352,574 - AO353_24330 0.67 -0.6
5,352,636 + AO353_24330 0.73 +1.0
5,352,636 + AO353_24330 0.73 -1.1
5,352,637 - AO353_24330 0.73 +0.3
5,352,686 + AO353_24330 0.77 -2.1
5,352,686 + AO353_24330 0.77 +0.5
5,352,687 - AO353_24330 0.77 +0.1
5,352,697 + AO353_24330 0.78 -2.0
5,352,697 + AO353_24330 0.78 -1.0
5,352,697 + AO353_24330 0.78 +1.1
5,352,698 - AO353_24330 0.78 +0.8
5,352,698 - AO353_24330 0.78 -0.3
5,352,698 - AO353_24330 0.78 +0.3
5,352,698 - AO353_24330 0.78 +0.1
5,352,698 - AO353_24330 0.78 +0.7
5,352,801 + AO353_24330 0.87 +0.1
5,352,801 + AO353_24330 0.87 -0.4
5,352,801 + AO353_24330 0.87 +0.7
5,352,801 + AO353_24330 0.87 -1.3
5,352,802 - AO353_24330 0.87 +0.7
5,352,802 - AO353_24330 0.87 -2.2
5,352,802 - AO353_24330 0.87 +0.5
5,352,802 - AO353_24330 0.87 +0.2
5,352,802 - AO353_24330 0.87 +1.1
5,352,802 - AO353_24330 0.87 -1.2
5,352,806 - AO353_24330 0.87 -1.1
5,352,806 - AO353_24330 0.87 +1.2
5,352,806 - AO353_24330 0.87 +0.8
5,352,806 - AO353_24330 0.87 +0.5
5,352,841 + -0.7
5,352,842 - +1.1
5,352,877 + -0.2
5,352,878 - +0.9
5,352,878 - -0.6
5,352,878 - +0.6
5,352,878 - +0.8
5,352,878 - -0.4
5,352,926 + +0.7
5,352,945 + -1.4
5,352,992 + -0.8
5,352,997 - -0.2
5,352,999 + -0.6
5,353,482 + +1.3
5,353,498 + AO353_24335 0.10 -1.9
5,353,891 - AO353_24335 0.37 -0.8
5,353,906 - AO353_24335 0.38 +0.6
5,354,070 + AO353_24335 0.49 +0.6
5,354,070 + AO353_24335 0.49 -2.0
5,354,071 - +0.6
5,354,165 + AO353_24335 0.55 -1.4
5,354,213 + AO353_24335 0.58 -0.6
5,354,332 - AO353_24335 0.66 -0.6
5,354,420 + AO353_24335 0.72 -2.0
5,354,420 + AO353_24335 0.72 +0.6
5,354,420 + AO353_24335 0.72 -1.5
5,354,421 - AO353_24335 0.72 -1.2
5,354,421 - AO353_24335 0.72 -0.6
5,354,493 + AO353_24335 0.77 -0.9
5,354,708 + +0.9
5,354,709 - -1.2
5,354,709 - +0.3
5,354,834 - -0.7
5,354,855 + +0.3
5,354,929 + -0.6
5,354,943 - +0.9
5,354,995 - AO353_24340 0.10 +0.3
5,355,109 + AO353_24340 0.30 -1.0
5,355,160 + AO353_24340 0.40 -0.7
5,355,521 + -0.2
5,355,523 + +0.8
5,355,682 + +0.6
5,355,709 + +1.1
5,355,781 + -1.4
5,355,781 + -0.2
5,355,781 + -3.5
5,355,781 + -1.0
5,355,782 - -0.4
5,355,819 + -0.3
5,355,820 - -0.5

Or see this region's nucleotide sequence