Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16345

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16335 and ABID97_RS16340 are separated by 46 nucleotidesABID97_RS16340 and ABID97_RS16345 are separated by 5 nucleotidesABID97_RS16345 and ABID97_RS16350 are separated by 135 nucleotidesABID97_RS16350 and ABID97_RS16355 overlap by 4 nucleotides ABID97_RS16335: ABID97_RS16335 - FMN-binding negative transcriptional regulator, at 3,382,683 to 3,383,327 _RS16335 ABID97_RS16340: ABID97_RS16340 - ankyrin repeat domain-containing protein, at 3,383,374 to 3,384,069 _RS16340 ABID97_RS16345: ABID97_RS16345 - heme-binding protein, at 3,384,075 to 3,384,578 _RS16345 ABID97_RS16350: ABID97_RS16350 - response regulator, at 3,384,714 to 3,385,352 _RS16350 ABID97_RS16355: ABID97_RS16355 - ATP-binding protein, at 3,385,349 to 3,386,843 _RS16355 Position (kb) 3384 3385Strain fitness (log2 ratio) -1 0 1 2 3at 3383.075 kb on - strand, within ABID97_RS16335at 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.323 kb on + strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.324 kb on - strandat 3383.964 kb on - strand, within ABID97_RS16340at 3383.964 kb on - strand, within ABID97_RS16340at 3383.964 kb on - strand, within ABID97_RS16340at 3384.229 kb on + strand, within ABID97_RS16345at 3384.230 kb on - strand, within ABID97_RS16345at 3384.230 kb on - strand, within ABID97_RS16345at 3384.642 kb on + strandat 3384.678 kb on - strandat 3384.678 kb on - strandat 3384.700 kb on - strandat 3384.700 kb on - strandat 3384.700 kb on - strandat 3385.284 kb on + strand, within ABID97_RS16350

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,383,075 - ABID97_RS16335 0.61 -0.3
3,383,323 + +0.1
3,383,323 + -0.4
3,383,323 + -0.8
3,383,323 + +2.8
3,383,323 + -0.2
3,383,323 + +1.3
3,383,323 + +0.5
3,383,323 + -0.8
3,383,323 + -1.7
3,383,324 - -0.7
3,383,324 - -0.2
3,383,324 - -0.0
3,383,324 - +0.0
3,383,324 - +0.5
3,383,324 - +0.1
3,383,964 - ABID97_RS16340 0.85 +0.1
3,383,964 - ABID97_RS16340 0.85 +0.6
3,383,964 - ABID97_RS16340 0.85 +0.0
3,384,229 + ABID97_RS16345 0.31 +0.7
3,384,230 - ABID97_RS16345 0.31 -0.2
3,384,230 - ABID97_RS16345 0.31 +0.0
3,384,642 + +0.6
3,384,678 - -0.4
3,384,678 - +0.4
3,384,700 - -1.7
3,384,700 - -0.3
3,384,700 - -0.5
3,385,284 + ABID97_RS16350 0.89 -0.6

Or see this region's nucleotide sequence