Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16335 and ABID97_RS16340 are separated by 46 nucleotides ABID97_RS16340 and ABID97_RS16345 are separated by 5 nucleotides ABID97_RS16345 and ABID97_RS16350 are separated by 135 nucleotides ABID97_RS16350 and ABID97_RS16355 overlap by 4 nucleotides
ABID97_RS16335: ABID97_RS16335 - FMN-binding negative transcriptional regulator, at 3,382,683 to 3,383,327
_RS16335
ABID97_RS16340: ABID97_RS16340 - ankyrin repeat domain-containing protein, at 3,383,374 to 3,384,069
_RS16340
ABID97_RS16345: ABID97_RS16345 - heme-binding protein, at 3,384,075 to 3,384,578
_RS16345
ABID97_RS16350: ABID97_RS16350 - response regulator, at 3,384,714 to 3,385,352
_RS16350
ABID97_RS16355: ABID97_RS16355 - ATP-binding protein, at 3,385,349 to 3,386,843
_RS16355
Position (kb)
3384
3385 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3383.075 kb on - strand, within ABID97_RS16335 at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.323 kb on + strand at 3383.324 kb on - strand at 3383.324 kb on - strand at 3383.324 kb on - strand at 3383.324 kb on - strand at 3383.324 kb on - strand at 3383.324 kb on - strand at 3383.964 kb on - strand, within ABID97_RS16340 at 3383.964 kb on - strand, within ABID97_RS16340 at 3383.964 kb on - strand, within ABID97_RS16340 at 3384.229 kb on + strand, within ABID97_RS16345 at 3384.230 kb on - strand, within ABID97_RS16345 at 3384.230 kb on - strand, within ABID97_RS16345 at 3384.642 kb on + strand at 3384.678 kb on - strand at 3384.678 kb on - strand at 3384.700 kb on - strand at 3384.700 kb on - strand at 3384.700 kb on - strand at 3385.284 kb on + strand, within ABID97_RS16350
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 3,383,075 - ABID97_RS16335 0.61 -0.3 3,383,323 + +0.1 3,383,323 + -0.4 3,383,323 + -0.8 3,383,323 + +2.8 3,383,323 + -0.2 3,383,323 + +1.3 3,383,323 + +0.5 3,383,323 + -0.8 3,383,323 + -1.7 3,383,324 - -0.7 3,383,324 - -0.2 3,383,324 - -0.0 3,383,324 - +0.0 3,383,324 - +0.5 3,383,324 - +0.1 3,383,964 - ABID97_RS16340 0.85 +0.1 3,383,964 - ABID97_RS16340 0.85 +0.6 3,383,964 - ABID97_RS16340 0.85 +0.0 3,384,229 + ABID97_RS16345 0.31 +0.7 3,384,230 - ABID97_RS16345 0.31 -0.2 3,384,230 - ABID97_RS16345 0.31 +0.0 3,384,642 + +0.6 3,384,678 - -0.4 3,384,678 - +0.4 3,384,700 - -1.7 3,384,700 - -0.3 3,384,700 - -0.5 3,385,284 + ABID97_RS16350 0.89 -0.6
Or see this region's nucleotide sequence