Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF48

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF46 and GFF47 are separated by 11 nucleotidesGFF47 and GFF48 are separated by 12 nucleotidesGFF48 and GFF49 are separated by 381 nucleotides GFF46 - Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage, at 26,742 to 28,094 GFF46 GFF47 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 28,106 to 28,963 GFF47 GFF48 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 28,976 to 29,665 GFF48 GFF49 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 30,047 to 31,330 GFF49 Position (kb) 28 29 30Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 29.735 kb on - strandat 29.735 kb on - strandat 29.873 kb on - strandat 29.913 kb on - strandat 29.991 kb on - strandat 30.018 kb on + strandat 30.019 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
remove
29,735 - -4.9
29,735 - -3.1
29,873 - -0.5
29,913 - -0.0
29,991 - +0.9
30,018 + -1.8
30,019 - +1.2

Or see this region's nucleotide sequence