Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4630

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4629 and GFF4630 are separated by 3 nucleotidesGFF4630 and GFF4631 are separated by 67 nucleotidesGFF4631 and GFF4632 are separated by 48 nucleotides GFF4629 - FIG01045205: hypothetical protein, at 421,495 to 422,262 GFF4629 GFF4630 - Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) in lipid-linked oligosaccharide synthesis cluster, at 422,266 to 424,215 GFF4630 GFF4631 - hypothetical protein, at 424,283 to 424,420 GFF4631 GFF4632 - Endonuclease VIII, at 424,469 to 425,260 GFF4632 Position (kb) 422 423 424 425Strain fitness (log2 ratio) -3 -2 -1 0 1at 424.342 kb on + strand, within GFF4631at 424.342 kb on + strand, within GFF4631at 424.345 kb on + strand, within GFF4631at 424.466 kb on - strandat 424.566 kb on + strand, within GFF4632at 424.633 kb on - strand, within GFF4632at 424.683 kb on - strand, within GFF4632at 424.732 kb on + strand, within GFF4632at 424.732 kb on + strand, within GFF4632at 424.733 kb on - strand, within GFF4632at 424.734 kb on + strand, within GFF4632at 424.768 kb on + strand, within GFF4632at 424.769 kb on - strand, within GFF4632at 424.977 kb on - strand, within GFF4632at 425.024 kb on - strand, within GFF4632at 425.097 kb on - strand, within GFF4632

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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424,342 + GFF4631 0.43 -0.3
424,342 + GFF4631 0.43 +1.5
424,345 + GFF4631 0.45 -1.0
424,466 - -0.6
424,566 + GFF4632 0.12 +0.0
424,633 - GFF4632 0.21 +0.8
424,683 - GFF4632 0.27 -1.4
424,732 + GFF4632 0.33 -1.1
424,732 + GFF4632 0.33 +0.3
424,733 - GFF4632 0.33 -0.2
424,734 + GFF4632 0.33 +0.6
424,768 + GFF4632 0.38 -1.4
424,769 - GFF4632 0.38 -0.0
424,977 - GFF4632 0.64 +0.1
425,024 - GFF4632 0.70 +0.0
425,097 - GFF4632 0.79 -2.8

Or see this region's nucleotide sequence