Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1092

Experiment: LB_plus_SM_buffer with FelixO1_phage 0.5 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1090 and GFF1091 are separated by 110 nucleotidesGFF1091 and GFF1092 are separated by 55 nucleotidesGFF1092 and GFF1093 are separated by 168 nucleotidesGFF1093 and GFF1094 are separated by 60 nucleotides GFF1090 - Chaperone protein DnaJ, at 274,379 to 275,518 GFF1090 GFF1091 - hypothetical protein, at 275,629 to 275,742 GFF1091 GFF1092 - Putative arylsulfatase regulatory protein, at 275,798 to 276,745 GFF1092 GFF1093 - Putative phage protein, at 276,914 to 277,216 GFF1093 GFF1094 - FIG01045823: hypothetical protein, at 277,277 to 277,810 GFF1094 Position (kb) 275 276 277Strain fitness (log2 ratio) -1 0 1 2 3at 274.981 kb on + strand, within GFF1090at 275.120 kb on + strand, within GFF1090at 275.120 kb on + strand, within GFF1090at 275.170 kb on + strand, within GFF1090at 276.055 kb on + strand, within GFF1092at 277.346 kb on + strand, within GFF1094at 277.350 kb on + strand, within GFF1094at 277.543 kb on - strand, within GFF1094

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
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274,981 + GFF1090 0.53 +0.2
275,120 + GFF1090 0.65 +0.4
275,120 + GFF1090 0.65 +3.0
275,170 + GFF1090 0.69 -1.2
276,055 + GFF1092 0.27 +0.9
277,346 + GFF1094 0.13 -0.0
277,350 + GFF1094 0.14 -0.9
277,543 - GFF1094 0.50 +0.4

Or see this region's nucleotide sequence