Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28570

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28560 and ABID97_RS28565 are separated by 42 nucleotidesABID97_RS28565 and ABID97_RS28570 are separated by 20 nucleotidesABID97_RS28570 and ABID97_RS28575 are separated by 29 nucleotides ABID97_RS28560: ABID97_RS28560 - aldehyde dehydrogenase family protein, at 631,312 to 632,793 _RS28560 ABID97_RS28565: ABID97_RS28565 - cupin domain-containing protein, at 632,836 to 633,555 _RS28565 ABID97_RS28570: ABID97_RS28570 - FAD-binding oxidoreductase, at 633,576 to 634,901 _RS28570 ABID97_RS28575: ABID97_RS28575 - LysR family transcriptional regulator, at 634,931 to 635,848 _RS28575 Position (kb) 633 634 635Strain fitness (log2 ratio) -1 0 1at 632.853 kb on - strandat 633.013 kb on + strand, within ABID97_RS28565at 633.399 kb on + strand, within ABID97_RS28565at 633.883 kb on - strand, within ABID97_RS28570at 634.678 kb on - strand, within ABID97_RS28570at 635.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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632,853 - +0.3
633,013 + ABID97_RS28565 0.25 +0.0
633,399 + ABID97_RS28565 0.78 -0.1
633,883 - ABID97_RS28570 0.23 +0.9
634,678 - ABID97_RS28570 0.83 +0.0
635,883 - +0.9

Or see this region's nucleotide sequence