Experiment: dichromate 20 uM, anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_19730 and IAI46_19735 are separated by 78 nucleotides IAI46_19735 and IAI46_19740 are separated by 57 nucleotides
IAI46_19730: IAI46_19730 - tyrosine-type recombinase/integrase, at 4,165,950 to 4,167,179
_19730
IAI46_19735: IAI46_19735 - histidine kinase, at 4,167,258 to 4,168,535
_19735
IAI46_19740: IAI46_19740 - DEAD/DEAH box helicase family protein, at 4,168,593 to 4,169,759
_19740
Position (kb)
4167
4168
4169 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4166.365 kb on + strand, within IAI46_19730 at 4166.375 kb on + strand, within IAI46_19730 at 4166.376 kb on - strand, within IAI46_19730 at 4166.397 kb on - strand, within IAI46_19730 at 4166.441 kb on - strand, within IAI46_19730 at 4166.534 kb on + strand, within IAI46_19730 at 4166.534 kb on + strand, within IAI46_19730 at 4166.574 kb on - strand, within IAI46_19730 at 4166.633 kb on + strand, within IAI46_19730 at 4166.633 kb on + strand, within IAI46_19730 at 4166.634 kb on - strand, within IAI46_19730 at 4166.693 kb on - strand, within IAI46_19730 at 4166.693 kb on - strand, within IAI46_19730 at 4166.743 kb on + strand, within IAI46_19730 at 4166.743 kb on + strand, within IAI46_19730 at 4166.744 kb on - strand, within IAI46_19730 at 4166.744 kb on - strand, within IAI46_19730 at 4166.744 kb on - strand, within IAI46_19730 at 4166.744 kb on - strand, within IAI46_19730 at 4166.747 kb on + strand, within IAI46_19730 at 4166.747 kb on + strand, within IAI46_19730 at 4166.748 kb on - strand, within IAI46_19730 at 4166.748 kb on - strand, within IAI46_19730 at 4166.753 kb on + strand, within IAI46_19730 at 4166.868 kb on - strand, within IAI46_19730 at 4166.939 kb on + strand, within IAI46_19730 at 4166.987 kb on + strand, within IAI46_19730 at 4166.987 kb on + strand, within IAI46_19730 at 4166.988 kb on - strand, within IAI46_19730 at 4167.084 kb on + strand at 4167.087 kb on - strand at 4167.177 kb on + strand at 4167.177 kb on + strand at 4167.181 kb on + strand at 4167.181 kb on + strand at 4167.184 kb on + strand at 4167.185 kb on - strand at 4167.195 kb on - strand at 4167.507 kb on + strand, within IAI46_19735 at 4167.573 kb on + strand, within IAI46_19735 at 4167.707 kb on + strand, within IAI46_19735 at 4167.708 kb on - strand, within IAI46_19735 at 4167.731 kb on - strand, within IAI46_19735 at 4167.737 kb on + strand, within IAI46_19735 at 4167.737 kb on + strand, within IAI46_19735 at 4167.864 kb on - strand, within IAI46_19735 at 4168.036 kb on + strand, within IAI46_19735 at 4168.037 kb on - strand, within IAI46_19735 at 4168.486 kb on + strand at 4168.735 kb on - strand, within IAI46_19740 at 4168.763 kb on + strand, within IAI46_19740 at 4169.021 kb on + strand, within IAI46_19740 at 4169.283 kb on - strand, within IAI46_19740 at 4169.331 kb on - strand, within IAI46_19740 at 4169.452 kb on - strand, within IAI46_19740
Per-strain Table
Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic remove 4,166,365 + IAI46_19730 0.34 -0.6 4,166,375 + IAI46_19730 0.35 +1.9 4,166,376 - IAI46_19730 0.35 +0.0 4,166,397 - IAI46_19730 0.36 +0.1 4,166,441 - IAI46_19730 0.40 -0.3 4,166,534 + IAI46_19730 0.47 +0.2 4,166,534 + IAI46_19730 0.47 +0.4 4,166,574 - IAI46_19730 0.51 -0.0 4,166,633 + IAI46_19730 0.56 +0.1 4,166,633 + IAI46_19730 0.56 +0.8 4,166,634 - IAI46_19730 0.56 -0.7 4,166,693 - IAI46_19730 0.60 +0.1 4,166,693 - IAI46_19730 0.60 -0.0 4,166,743 + IAI46_19730 0.64 +0.3 4,166,743 + IAI46_19730 0.64 -0.4 4,166,744 - IAI46_19730 0.65 +0.7 4,166,744 - IAI46_19730 0.65 -0.7 4,166,744 - IAI46_19730 0.65 -0.7 4,166,744 - IAI46_19730 0.65 -0.5 4,166,747 + IAI46_19730 0.65 +0.3 4,166,747 + IAI46_19730 0.65 -0.1 4,166,748 - IAI46_19730 0.65 -0.9 4,166,748 - IAI46_19730 0.65 -0.8 4,166,753 + IAI46_19730 0.65 -0.7 4,166,868 - IAI46_19730 0.75 +0.4 4,166,939 + IAI46_19730 0.80 -0.5 4,166,987 + IAI46_19730 0.84 -0.9 4,166,987 + IAI46_19730 0.84 -1.2 4,166,988 - IAI46_19730 0.84 -0.9 4,167,084 + -0.0 4,167,087 - -0.1 4,167,177 + +0.1 4,167,177 + +0.4 4,167,181 + +0.7 4,167,181 + +0.2 4,167,184 + -0.1 4,167,185 - +0.8 4,167,195 - +0.2 4,167,507 + IAI46_19735 0.19 -0.4 4,167,573 + IAI46_19735 0.25 +0.9 4,167,707 + IAI46_19735 0.35 +0.0 4,167,708 - IAI46_19735 0.35 +0.6 4,167,731 - IAI46_19735 0.37 -0.5 4,167,737 + IAI46_19735 0.37 +0.8 4,167,737 + IAI46_19735 0.37 +0.3 4,167,864 - IAI46_19735 0.47 -1.4 4,168,036 + IAI46_19735 0.61 +0.0 4,168,037 - IAI46_19735 0.61 +2.9 4,168,486 + -0.3 4,168,735 - IAI46_19740 0.12 +2.4 4,168,763 + IAI46_19740 0.15 -1.0 4,169,021 + IAI46_19740 0.37 +0.4 4,169,283 - IAI46_19740 0.59 +0.3 4,169,331 - IAI46_19740 0.63 +1.6 4,169,452 - IAI46_19740 0.74 +0.4
Or see this region's nucleotide sequence