Strain Fitness in Serratia liquefaciens MT49 around IAI46_19735

Experiment: dichromate 20 uM, anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_19730 and IAI46_19735 are separated by 78 nucleotidesIAI46_19735 and IAI46_19740 are separated by 57 nucleotides IAI46_19730: IAI46_19730 - tyrosine-type recombinase/integrase, at 4,165,950 to 4,167,179 _19730 IAI46_19735: IAI46_19735 - histidine kinase, at 4,167,258 to 4,168,535 _19735 IAI46_19740: IAI46_19740 - DEAD/DEAH box helicase family protein, at 4,168,593 to 4,169,759 _19740 Position (kb) 4167 4168 4169Strain fitness (log2 ratio) -1 0 1 2 3at 4166.365 kb on + strand, within IAI46_19730at 4166.375 kb on + strand, within IAI46_19730at 4166.376 kb on - strand, within IAI46_19730at 4166.397 kb on - strand, within IAI46_19730at 4166.441 kb on - strand, within IAI46_19730at 4166.534 kb on + strand, within IAI46_19730at 4166.534 kb on + strand, within IAI46_19730at 4166.574 kb on - strand, within IAI46_19730at 4166.633 kb on + strand, within IAI46_19730at 4166.633 kb on + strand, within IAI46_19730at 4166.634 kb on - strand, within IAI46_19730at 4166.693 kb on - strand, within IAI46_19730at 4166.693 kb on - strand, within IAI46_19730at 4166.743 kb on + strand, within IAI46_19730at 4166.743 kb on + strand, within IAI46_19730at 4166.744 kb on - strand, within IAI46_19730at 4166.744 kb on - strand, within IAI46_19730at 4166.744 kb on - strand, within IAI46_19730at 4166.744 kb on - strand, within IAI46_19730at 4166.747 kb on + strand, within IAI46_19730at 4166.747 kb on + strand, within IAI46_19730at 4166.748 kb on - strand, within IAI46_19730at 4166.748 kb on - strand, within IAI46_19730at 4166.753 kb on + strand, within IAI46_19730at 4166.868 kb on - strand, within IAI46_19730at 4166.939 kb on + strand, within IAI46_19730at 4166.987 kb on + strand, within IAI46_19730at 4166.987 kb on + strand, within IAI46_19730at 4166.988 kb on - strand, within IAI46_19730at 4167.084 kb on + strandat 4167.087 kb on - strandat 4167.177 kb on + strandat 4167.177 kb on + strandat 4167.181 kb on + strandat 4167.181 kb on + strandat 4167.184 kb on + strandat 4167.185 kb on - strandat 4167.195 kb on - strandat 4167.507 kb on + strand, within IAI46_19735at 4167.573 kb on + strand, within IAI46_19735at 4167.707 kb on + strand, within IAI46_19735at 4167.708 kb on - strand, within IAI46_19735at 4167.731 kb on - strand, within IAI46_19735at 4167.737 kb on + strand, within IAI46_19735at 4167.737 kb on + strand, within IAI46_19735at 4167.864 kb on - strand, within IAI46_19735at 4168.036 kb on + strand, within IAI46_19735at 4168.037 kb on - strand, within IAI46_19735at 4168.486 kb on + strandat 4168.735 kb on - strand, within IAI46_19740at 4168.763 kb on + strand, within IAI46_19740at 4169.021 kb on + strand, within IAI46_19740at 4169.283 kb on - strand, within IAI46_19740at 4169.331 kb on - strand, within IAI46_19740at 4169.452 kb on - strand, within IAI46_19740

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, anaerobic
remove
4,166,365 + IAI46_19730 0.34 -0.6
4,166,375 + IAI46_19730 0.35 +1.9
4,166,376 - IAI46_19730 0.35 +0.0
4,166,397 - IAI46_19730 0.36 +0.1
4,166,441 - IAI46_19730 0.40 -0.3
4,166,534 + IAI46_19730 0.47 +0.2
4,166,534 + IAI46_19730 0.47 +0.4
4,166,574 - IAI46_19730 0.51 -0.0
4,166,633 + IAI46_19730 0.56 +0.1
4,166,633 + IAI46_19730 0.56 +0.8
4,166,634 - IAI46_19730 0.56 -0.7
4,166,693 - IAI46_19730 0.60 +0.1
4,166,693 - IAI46_19730 0.60 -0.0
4,166,743 + IAI46_19730 0.64 +0.3
4,166,743 + IAI46_19730 0.64 -0.4
4,166,744 - IAI46_19730 0.65 +0.7
4,166,744 - IAI46_19730 0.65 -0.7
4,166,744 - IAI46_19730 0.65 -0.7
4,166,744 - IAI46_19730 0.65 -0.5
4,166,747 + IAI46_19730 0.65 +0.3
4,166,747 + IAI46_19730 0.65 -0.1
4,166,748 - IAI46_19730 0.65 -0.9
4,166,748 - IAI46_19730 0.65 -0.8
4,166,753 + IAI46_19730 0.65 -0.7
4,166,868 - IAI46_19730 0.75 +0.4
4,166,939 + IAI46_19730 0.80 -0.5
4,166,987 + IAI46_19730 0.84 -0.9
4,166,987 + IAI46_19730 0.84 -1.2
4,166,988 - IAI46_19730 0.84 -0.9
4,167,084 + -0.0
4,167,087 - -0.1
4,167,177 + +0.1
4,167,177 + +0.4
4,167,181 + +0.7
4,167,181 + +0.2
4,167,184 + -0.1
4,167,185 - +0.8
4,167,195 - +0.2
4,167,507 + IAI46_19735 0.19 -0.4
4,167,573 + IAI46_19735 0.25 +0.9
4,167,707 + IAI46_19735 0.35 +0.0
4,167,708 - IAI46_19735 0.35 +0.6
4,167,731 - IAI46_19735 0.37 -0.5
4,167,737 + IAI46_19735 0.37 +0.8
4,167,737 + IAI46_19735 0.37 +0.3
4,167,864 - IAI46_19735 0.47 -1.4
4,168,036 + IAI46_19735 0.61 +0.0
4,168,037 - IAI46_19735 0.61 +2.9
4,168,486 + -0.3
4,168,735 - IAI46_19740 0.12 +2.4
4,168,763 + IAI46_19740 0.15 -1.0
4,169,021 + IAI46_19740 0.37 +0.4
4,169,283 - IAI46_19740 0.59 +0.3
4,169,331 - IAI46_19740 0.63 +1.6
4,169,452 - IAI46_19740 0.74 +0.4

Or see this region's nucleotide sequence