Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02295 and ABIE40_RS02300 are separated by 15 nucleotides ABIE40_RS02300 and ABIE40_RS02305 are separated by 44 nucleotides ABIE40_RS02305 and ABIE40_RS02310 are separated by 33 nucleotides ABIE40_RS02310 and ABIE40_RS02315 are separated by 100 nucleotides
ABIE40_RS02295: ABIE40_RS02295 - phosphate ABC transporter permease PstA, at 454,769 to 456,091
_RS02295
ABIE40_RS02300: ABIE40_RS02300 - phosphate ABC transporter ATP-binding protein PstB, at 456,107 to 456,922
_RS02300
ABIE40_RS02305: ABIE40_RS02305 - phosphate signaling complex protein PhoU, at 456,967 to 457,680
_RS02305
ABIE40_RS02310: ABIE40_RS02310 - phosphate regulon transcriptional regulator PhoB, at 457,714 to 458,397
_RS02310
ABIE40_RS02315: ABIE40_RS02315 - GcrA family cell cycle regulator, at 458,498 to 459,016
_RS02315
Position (kb) 456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.999 kb on - strand at 455.999 kb on - strand at 455.999 kb on - strand at 456.094 kb on + strand at 456.170 kb on + strand at 456.171 kb on - strand at 456.171 kb on - strand at 456.171 kb on - strand at 456.171 kb on - strand at 456.171 kb on - strand at 456.200 kb on + strand, within ABIE40_RS02300 at 456.201 kb on - strand, within ABIE40_RS02300 at 456.203 kb on + strand, within ABIE40_RS02300 at 456.204 kb on - strand, within ABIE40_RS02300 at 456.204 kb on - strand, within ABIE40_RS02300 at 456.303 kb on + strand, within ABIE40_RS02300 at 456.380 kb on - strand, within ABIE40_RS02300 at 456.383 kb on + strand, within ABIE40_RS02300 at 456.383 kb on + strand, within ABIE40_RS02300 at 456.383 kb on + strand, within ABIE40_RS02300 at 456.383 kb on + strand, within ABIE40_RS02300 at 456.383 kb on + strand, within ABIE40_RS02300 at 456.383 kb on + strand, within ABIE40_RS02300 at 456.384 kb on - strand, within ABIE40_RS02300 at 456.384 kb on - strand, within ABIE40_RS02300 at 456.384 kb on - strand, within ABIE40_RS02300 at 456.384 kb on - strand, within ABIE40_RS02300 at 456.384 kb on - strand, within ABIE40_RS02300 at 456.468 kb on - strand, within ABIE40_RS02300 at 456.468 kb on - strand, within ABIE40_RS02300 at 456.468 kb on - strand, within ABIE40_RS02300 at 456.537 kb on + strand, within ABIE40_RS02300 at 456.537 kb on + strand, within ABIE40_RS02300 at 456.538 kb on - strand, within ABIE40_RS02300 at 456.755 kb on + strand, within ABIE40_RS02300 at 456.755 kb on + strand, within ABIE40_RS02300 at 456.755 kb on + strand, within ABIE40_RS02300 at 456.756 kb on - strand, within ABIE40_RS02300 at 456.899 kb on + strand at 456.899 kb on + strand at 456.899 kb on + strand at 456.899 kb on + strand at 456.899 kb on + strand at 456.899 kb on + strand at 456.899 kb on + strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.900 kb on - strand at 456.946 kb on - strand at 456.995 kb on - strand at 457.394 kb on - strand, within ABIE40_RS02305 at 457.394 kb on - strand, within ABIE40_RS02305 at 457.460 kb on - strand, within ABIE40_RS02305 at 457.460 kb on - strand, within ABIE40_RS02305 at 457.460 kb on - strand, within ABIE40_RS02305 at 457.460 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.490 kb on - strand, within ABIE40_RS02305 at 457.598 kb on - strand, within ABIE40_RS02305 at 457.598 kb on - strand, within ABIE40_RS02305 at 457.598 kb on - strand, within ABIE40_RS02305 at 457.678 kb on + strand at 457.678 kb on + strand at 457.678 kb on + strand at 457.679 kb on - strand at 457.679 kb on - strand at 457.710 kb on + strand at 457.710 kb on + strand at 457.710 kb on + strand at 457.711 kb on - strand at 457.711 kb on - strand at 457.711 kb on - strand at 457.711 kb on - strand at 457.771 kb on + strand at 457.863 kb on + strand, within ABIE40_RS02310 at 457.864 kb on - strand, within ABIE40_RS02310 at 457.889 kb on + strand, within ABIE40_RS02310 at 457.889 kb on + strand, within ABIE40_RS02310 at 458.017 kb on + strand, within ABIE40_RS02310 at 458.017 kb on + strand, within ABIE40_RS02310 at 458.017 kb on + strand, within ABIE40_RS02310 at 458.017 kb on + strand, within ABIE40_RS02310 at 458.017 kb on + strand, within ABIE40_RS02310 at 458.018 kb on - strand, within ABIE40_RS02310 at 458.018 kb on - strand, within ABIE40_RS02310 at 458.018 kb on - strand, within ABIE40_RS02310 at 458.018 kb on - strand, within ABIE40_RS02310 at 458.018 kb on - strand, within ABIE40_RS02310 at 458.018 kb on - strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.278 kb on + strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.279 kb on - strand, within ABIE40_RS02310 at 458.292 kb on + strand, within ABIE40_RS02310 at 458.293 kb on - strand, within ABIE40_RS02310 at 458.380 kb on + strand at 458.381 kb on - strand at 458.434 kb on - strand at 458.434 kb on - strand at 458.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 455,999 - -1.3 455,999 - +0.1 455,999 - -1.4 456,094 + +0.8 456,170 + -0.3 456,171 - -1.0 456,171 - -0.9 456,171 - +0.5 456,171 - -1.1 456,171 - +1.0 456,200 + ABIE40_RS02300 0.11 -0.0 456,201 - ABIE40_RS02300 0.12 +0.6 456,203 + ABIE40_RS02300 0.12 -0.8 456,204 - ABIE40_RS02300 0.12 -0.5 456,204 - ABIE40_RS02300 0.12 +0.3 456,303 + ABIE40_RS02300 0.24 -0.1 456,380 - ABIE40_RS02300 0.33 -1.7 456,383 + ABIE40_RS02300 0.34 +0.3 456,383 + ABIE40_RS02300 0.34 -0.7 456,383 + ABIE40_RS02300 0.34 -0.1 456,383 + ABIE40_RS02300 0.34 -2.3 456,383 + ABIE40_RS02300 0.34 +1.6 456,383 + ABIE40_RS02300 0.34 -1.6 456,384 - ABIE40_RS02300 0.34 +0.4 456,384 - ABIE40_RS02300 0.34 -1.3 456,384 - ABIE40_RS02300 0.34 +1.1 456,384 - ABIE40_RS02300 0.34 -0.7 456,384 - ABIE40_RS02300 0.34 +0.2 456,468 - ABIE40_RS02300 0.44 +0.3 456,468 - ABIE40_RS02300 0.44 -1.6 456,468 - ABIE40_RS02300 0.44 -1.3 456,537 + ABIE40_RS02300 0.53 +0.6 456,537 + ABIE40_RS02300 0.53 +0.4 456,538 - ABIE40_RS02300 0.53 -2.5 456,755 + ABIE40_RS02300 0.79 -0.6 456,755 + ABIE40_RS02300 0.79 -0.9 456,755 + ABIE40_RS02300 0.79 +1.8 456,756 - ABIE40_RS02300 0.80 -0.2 456,899 + -1.6 456,899 + +1.4 456,899 + -0.1 456,899 + +0.4 456,899 + -0.8 456,899 + -2.6 456,899 + -1.1 456,900 - -1.4 456,900 - +0.1 456,900 - +1.0 456,900 - +0.0 456,900 - -0.2 456,900 - -0.2 456,900 - -2.4 456,900 - +0.5 456,946 - -0.4 456,995 - -0.9 457,394 - ABIE40_RS02305 0.60 -1.4 457,394 - ABIE40_RS02305 0.60 -0.7 457,460 - ABIE40_RS02305 0.69 -0.6 457,460 - ABIE40_RS02305 0.69 +0.2 457,460 - ABIE40_RS02305 0.69 -0.6 457,460 - ABIE40_RS02305 0.69 -1.6 457,490 - ABIE40_RS02305 0.73 -1.7 457,490 - ABIE40_RS02305 0.73 -1.3 457,490 - ABIE40_RS02305 0.73 -1.6 457,490 - ABIE40_RS02305 0.73 -0.1 457,490 - ABIE40_RS02305 0.73 -0.8 457,490 - ABIE40_RS02305 0.73 +0.3 457,490 - ABIE40_RS02305 0.73 -0.1 457,490 - ABIE40_RS02305 0.73 -1.2 457,598 - ABIE40_RS02305 0.88 -1.2 457,598 - ABIE40_RS02305 0.88 -2.6 457,598 - ABIE40_RS02305 0.88 +1.8 457,678 + +0.6 457,678 + -0.7 457,678 + -0.9 457,679 - -0.2 457,679 - -0.1 457,710 + -1.9 457,710 + -0.9 457,710 + +0.2 457,711 - -0.2 457,711 - +1.8 457,711 - +0.6 457,711 - -1.9 457,771 + +0.0 457,863 + ABIE40_RS02310 0.22 -0.4 457,864 - ABIE40_RS02310 0.22 -0.2 457,889 + ABIE40_RS02310 0.26 +0.2 457,889 + ABIE40_RS02310 0.26 -0.8 458,017 + ABIE40_RS02310 0.44 +0.4 458,017 + ABIE40_RS02310 0.44 +0.4 458,017 + ABIE40_RS02310 0.44 -0.4 458,017 + ABIE40_RS02310 0.44 -0.7 458,017 + ABIE40_RS02310 0.44 -0.5 458,018 - ABIE40_RS02310 0.44 -0.2 458,018 - ABIE40_RS02310 0.44 -1.3 458,018 - ABIE40_RS02310 0.44 +0.4 458,018 - ABIE40_RS02310 0.44 +0.1 458,018 - ABIE40_RS02310 0.44 -0.3 458,018 - ABIE40_RS02310 0.44 +0.0 458,278 + ABIE40_RS02310 0.82 -1.2 458,278 + ABIE40_RS02310 0.82 -0.0 458,278 + ABIE40_RS02310 0.82 -0.2 458,278 + ABIE40_RS02310 0.82 +0.4 458,278 + ABIE40_RS02310 0.82 +0.4 458,278 + ABIE40_RS02310 0.82 +0.6 458,278 + ABIE40_RS02310 0.82 +0.3 458,278 + ABIE40_RS02310 0.82 +0.0 458,278 + ABIE40_RS02310 0.82 +1.8 458,278 + ABIE40_RS02310 0.82 +1.4 458,278 + ABIE40_RS02310 0.82 -1.1 458,278 + ABIE40_RS02310 0.82 -0.1 458,278 + ABIE40_RS02310 0.82 +0.9 458,278 + ABIE40_RS02310 0.82 -1.3 458,278 + ABIE40_RS02310 0.82 +0.4 458,278 + ABIE40_RS02310 0.82 +1.5 458,278 + ABIE40_RS02310 0.82 -1.3 458,278 + ABIE40_RS02310 0.82 -1.8 458,279 - ABIE40_RS02310 0.83 +0.6 458,279 - ABIE40_RS02310 0.83 +0.1 458,279 - ABIE40_RS02310 0.83 -0.1 458,279 - ABIE40_RS02310 0.83 +1.6 458,279 - ABIE40_RS02310 0.83 +1.2 458,279 - ABIE40_RS02310 0.83 -1.1 458,279 - ABIE40_RS02310 0.83 +1.1 458,279 - ABIE40_RS02310 0.83 -1.0 458,279 - ABIE40_RS02310 0.83 -0.2 458,292 + ABIE40_RS02310 0.85 -1.0 458,293 - ABIE40_RS02310 0.85 -2.2 458,380 + -1.6 458,381 - +0.4 458,434 - +0.0 458,434 - +0.1 458,529 + +0.4
Or see this region's nucleotide sequence