Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09265 and ABID97_RS09270 are separated by 286 nucleotides ABID97_RS09270 and ABID97_RS09275 overlap by 4 nucleotides ABID97_RS09275 and ABID97_RS09280 are separated by 38 nucleotides
ABID97_RS09265: ABID97_RS09265 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,947,066 to 1,948,205
_RS09265
ABID97_RS09270: ABID97_RS09270 - exodeoxyribonuclease VII small subunit, at 1,948,492 to 1,948,758
_RS09270
ABID97_RS09275: ABID97_RS09275 - polyprenyl synthetase family protein, at 1,948,755 to 1,949,669
_RS09275
ABID97_RS09280: ABID97_RS09280 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,949,708 to 1,951,591
_RS09280
Position (kb) 1948
1949
1950 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1947.877 kb on + strand, within ABID97_RS09265 at 1947.877 kb on + strand, within ABID97_RS09265 at 1948.048 kb on + strand, within ABID97_RS09265 at 1948.048 kb on + strand, within ABID97_RS09265 at 1948.087 kb on + strand, within ABID97_RS09265 at 1948.087 kb on + strand, within ABID97_RS09265 at 1948.088 kb on - strand, within ABID97_RS09265 at 1948.088 kb on - strand, within ABID97_RS09265 at 1948.148 kb on - strand at 1948.195 kb on - strand at 1948.328 kb on + strand at 1948.328 kb on + strand at 1948.329 kb on - strand at 1948.329 kb on - strand at 1948.462 kb on - strand at 1948.564 kb on + strand, within ABID97_RS09270 at 1948.565 kb on - strand, within ABID97_RS09270 at 1948.565 kb on - strand, within ABID97_RS09270 at 1948.649 kb on - strand, within ABID97_RS09270 at 1948.649 kb on - strand, within ABID97_RS09270 at 1948.890 kb on + strand, within ABID97_RS09275 at 1948.891 kb on - strand, within ABID97_RS09275 at 1949.013 kb on + strand, within ABID97_RS09275 at 1949.523 kb on + strand, within ABID97_RS09275 at 1949.523 kb on + strand, within ABID97_RS09275 at 1949.523 kb on + strand, within ABID97_RS09275 at 1949.523 kb on + strand, within ABID97_RS09275 at 1949.523 kb on + strand, within ABID97_RS09275 at 1949.523 kb on + strand, within ABID97_RS09275 at 1949.524 kb on - strand, within ABID97_RS09275
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 1,947,877 + ABID97_RS09265 0.71 +2.7 1,947,877 + ABID97_RS09265 0.71 +0.7 1,948,048 + ABID97_RS09265 0.86 +0.4 1,948,048 + ABID97_RS09265 0.86 +0.2 1,948,087 + ABID97_RS09265 0.90 +0.2 1,948,087 + ABID97_RS09265 0.90 +0.2 1,948,088 - ABID97_RS09265 0.90 +1.5 1,948,088 - ABID97_RS09265 0.90 -0.1 1,948,148 - +0.7 1,948,195 - +0.3 1,948,328 + -2.5 1,948,328 + -1.3 1,948,329 - -1.9 1,948,329 - -0.7 1,948,462 - -1.9 1,948,564 + ABID97_RS09270 0.27 -2.0 1,948,565 - ABID97_RS09270 0.27 -0.4 1,948,565 - ABID97_RS09270 0.27 -1.3 1,948,649 - ABID97_RS09270 0.59 +0.8 1,948,649 - ABID97_RS09270 0.59 +0.6 1,948,890 + ABID97_RS09275 0.15 +1.0 1,948,891 - ABID97_RS09275 0.15 +3.0 1,949,013 + ABID97_RS09275 0.28 -0.2 1,949,523 + ABID97_RS09275 0.84 -0.6 1,949,523 + ABID97_RS09275 0.84 -3.2 1,949,523 + ABID97_RS09275 0.84 -1.3 1,949,523 + ABID97_RS09275 0.84 -2.4 1,949,523 + ABID97_RS09275 0.84 -2.3 1,949,523 + ABID97_RS09275 0.84 -2.0 1,949,524 - ABID97_RS09275 0.84 -0.4
Or see this region's nucleotide sequence