Experiment: L-Phenylalanine carbon 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00800 and PFR28_00801 overlap by 1 nucleotides PFR28_00801 and PFR28_00802 are separated by 98 nucleotides PFR28_00802 and PFR28_00803 are separated by 346 nucleotides
PFR28_00800: PFR28_00800 - Aspartate aminotransferase, at 867,398 to 868,591
_00800
PFR28_00801: PFR28_00801 - Putative pterin-4-alpha-carbinolamine dehydratase, at 868,591 to 868,947
_00801
PFR28_00802: PFR28_00802 - Phenylalanine-4-hydroxylase, at 869,046 to 869,831
_00802
PFR28_00803: PFR28_00803 - Transcriptional regulatory protein TyrR, at 870,178 to 871,740
_00803
Position (kb) 869
870 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 868.143 kb on + strand, within PFR28_00800 at 868.144 kb on - strand, within PFR28_00800 at 868.144 kb on - strand, within PFR28_00800 at 868.150 kb on - strand, within PFR28_00800 at 868.150 kb on - strand, within PFR28_00800 at 868.395 kb on + strand, within PFR28_00800 at 868.395 kb on + strand, within PFR28_00800 at 868.395 kb on + strand, within PFR28_00800 at 868.395 kb on + strand, within PFR28_00800 at 868.395 kb on + strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.396 kb on - strand, within PFR28_00800 at 868.482 kb on + strand at 868.482 kb on + strand at 868.482 kb on + strand at 868.482 kb on + strand at 868.482 kb on + strand at 868.483 kb on - strand at 868.483 kb on - strand at 868.483 kb on - strand at 868.483 kb on - strand at 868.530 kb on + strand at 868.531 kb on - strand at 868.531 kb on - strand at 868.531 kb on - strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.592 kb on + strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.593 kb on - strand at 868.967 kb on + strand at 868.967 kb on + strand at 868.967 kb on + strand at 868.968 kb on - strand at 868.968 kb on - strand at 868.968 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 869.167 kb on + strand, within PFR28_00802 at 869.168 kb on - strand, within PFR28_00802 at 869.168 kb on - strand, within PFR28_00802 at 869.168 kb on - strand, within PFR28_00802 at 869.168 kb on - strand, within PFR28_00802 at 869.257 kb on + strand, within PFR28_00802 at 869.257 kb on + strand, within PFR28_00802 at 869.258 kb on - strand, within PFR28_00802 at 869.258 kb on - strand, within PFR28_00802 at 869.258 kb on - strand, within PFR28_00802 at 869.296 kb on + strand, within PFR28_00802 at 869.297 kb on - strand, within PFR28_00802 at 869.366 kb on - strand, within PFR28_00802 at 869.366 kb on - strand, within PFR28_00802 at 869.407 kb on + strand, within PFR28_00802 at 869.407 kb on + strand, within PFR28_00802 at 869.407 kb on + strand, within PFR28_00802 at 869.407 kb on + strand, within PFR28_00802 at 869.407 kb on + strand, within PFR28_00802 at 869.407 kb on + strand, within PFR28_00802 at 869.408 kb on - strand, within PFR28_00802 at 869.408 kb on - strand, within PFR28_00802 at 869.695 kb on + strand, within PFR28_00802 at 869.696 kb on - strand, within PFR28_00802 at 869.696 kb on - strand, within PFR28_00802 at 869.696 kb on - strand, within PFR28_00802 at 869.748 kb on - strand, within PFR28_00802 at 869.748 kb on - strand, within PFR28_00802 at 869.748 kb on - strand, within PFR28_00802 at 869.748 kb on - strand, within PFR28_00802 at 869.783 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.815 kb on + strand at 869.816 kb on - strand at 869.816 kb on - strand at 869.816 kb on - strand at 869.885 kb on + strand at 869.891 kb on + strand at 869.891 kb on + strand at 869.892 kb on - strand at 869.908 kb on + strand at 869.909 kb on - strand at 869.909 kb on - strand at 869.909 kb on - strand at 869.914 kb on + strand at 869.914 kb on + strand at 869.914 kb on + strand at 869.964 kb on + strand at 869.964 kb on + strand at 869.964 kb on + strand at 869.964 kb on + strand at 869.964 kb on + strand at 869.964 kb on + strand at 869.964 kb on + strand at 869.965 kb on - strand at 869.965 kb on - strand at 869.965 kb on - strand at 869.965 kb on - strand at 869.965 kb on - strand at 869.965 kb on - strand at 869.965 kb on - strand at 869.965 kb on - strand at 870.046 kb on + strand at 870.059 kb on + strand at 870.072 kb on + strand at 870.247 kb on + strand at 870.248 kb on - strand at 870.301 kb on + strand at 870.301 kb on + strand at 870.302 kb on - strand at 870.302 kb on - strand at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.757 kb on + strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.758 kb on - strand, within PFR28_00803 at 870.759 kb on + strand, within PFR28_00803 at 870.759 kb on + strand, within PFR28_00803 at 870.759 kb on + strand, within PFR28_00803 at 870.760 kb on - strand, within PFR28_00803 at 870.760 kb on - strand, within PFR28_00803 at 870.760 kb on - strand, within PFR28_00803 at 870.795 kb on + strand, within PFR28_00803 at 870.795 kb on + strand, within PFR28_00803
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine carbon 5 mM remove 868,143 + PFR28_00800 0.62 -3.7 868,144 - PFR28_00800 0.62 -0.7 868,144 - PFR28_00800 0.62 -0.1 868,150 - PFR28_00800 0.63 -0.8 868,150 - PFR28_00800 0.63 -1.0 868,395 + PFR28_00800 0.84 -1.9 868,395 + PFR28_00800 0.84 +0.1 868,395 + PFR28_00800 0.84 -1.0 868,395 + PFR28_00800 0.84 -2.9 868,395 + PFR28_00800 0.84 -1.1 868,396 - PFR28_00800 0.84 -2.7 868,396 - PFR28_00800 0.84 -2.1 868,396 - PFR28_00800 0.84 -0.3 868,396 - PFR28_00800 0.84 -0.7 868,396 - PFR28_00800 0.84 -0.7 868,396 - PFR28_00800 0.84 -1.0 868,396 - PFR28_00800 0.84 -2.0 868,482 + -3.8 868,482 + -2.3 868,482 + -1.9 868,482 + -1.2 868,482 + -1.4 868,483 - -1.7 868,483 - -1.0 868,483 - -3.9 868,483 - -0.5 868,530 + -2.8 868,531 - +0.6 868,531 - -1.9 868,531 - -1.3 868,592 + -2.0 868,592 + -1.4 868,592 + -2.3 868,592 + -0.6 868,592 + -1.1 868,592 + +0.1 868,592 + -0.1 868,592 + -2.5 868,592 + -2.4 868,592 + -0.7 868,593 - -1.9 868,593 - -1.2 868,593 - -0.3 868,593 - -1.7 868,593 - -1.1 868,593 - -0.4 868,593 - -0.3 868,593 - -0.3 868,593 - +0.1 868,967 + -0.0 868,967 + -1.0 868,967 + -0.2 868,968 - -0.7 868,968 - +0.6 868,968 - -1.2 868,995 - -1.0 868,995 - -0.5 869,167 + PFR28_00802 0.15 -3.4 869,168 - PFR28_00802 0.16 -1.7 869,168 - PFR28_00802 0.16 -1.6 869,168 - PFR28_00802 0.16 -1.4 869,168 - PFR28_00802 0.16 -0.5 869,257 + PFR28_00802 0.27 -2.8 869,257 + PFR28_00802 0.27 -0.0 869,258 - PFR28_00802 0.27 -1.8 869,258 - PFR28_00802 0.27 -0.0 869,258 - PFR28_00802 0.27 -1.4 869,296 + PFR28_00802 0.32 -2.2 869,297 - PFR28_00802 0.32 -0.8 869,366 - PFR28_00802 0.41 -0.8 869,366 - PFR28_00802 0.41 -1.6 869,407 + PFR28_00802 0.46 -1.9 869,407 + PFR28_00802 0.46 -1.8 869,407 + PFR28_00802 0.46 -1.4 869,407 + PFR28_00802 0.46 -2.2 869,407 + PFR28_00802 0.46 -4.4 869,407 + PFR28_00802 0.46 -3.9 869,408 - PFR28_00802 0.46 -1.9 869,408 - PFR28_00802 0.46 -0.9 869,695 + PFR28_00802 0.83 -4.2 869,696 - PFR28_00802 0.83 -1.6 869,696 - PFR28_00802 0.83 -2.6 869,696 - PFR28_00802 0.83 +0.9 869,748 - PFR28_00802 0.89 -3.0 869,748 - PFR28_00802 0.89 -2.2 869,748 - PFR28_00802 0.89 +0.5 869,748 - PFR28_00802 0.89 -1.6 869,783 + -3.4 869,815 + -1.6 869,815 + -2.5 869,815 + -3.7 869,815 + -4.8 869,815 + -0.9 869,815 + -2.1 869,815 + -2.5 869,815 + -2.1 869,815 + -1.9 869,816 - -3.1 869,816 - -2.9 869,816 - -4.2 869,885 + -1.7 869,891 + -0.6 869,891 + -0.6 869,892 - -1.0 869,908 + -1.9 869,909 - -0.3 869,909 - -0.8 869,909 - -1.9 869,914 + -3.2 869,914 + -1.5 869,914 + -1.8 869,964 + -2.5 869,964 + -0.2 869,964 + -4.5 869,964 + -4.2 869,964 + -0.7 869,964 + -3.0 869,964 + -1.8 869,965 - -2.5 869,965 - -1.1 869,965 - -2.1 869,965 - -1.4 869,965 - -1.6 869,965 - -3.3 869,965 - -1.2 869,965 - -2.0 870,046 + -0.4 870,059 + -4.1 870,072 + -1.0 870,247 + -2.6 870,248 - -1.7 870,301 + -1.5 870,301 + -2.8 870,302 - -4.0 870,302 - -0.9 870,757 + PFR28_00803 0.37 -1.9 870,757 + PFR28_00803 0.37 -1.2 870,757 + PFR28_00803 0.37 -4.1 870,757 + PFR28_00803 0.37 -2.3 870,757 + PFR28_00803 0.37 +1.9 870,757 + PFR28_00803 0.37 -1.3 870,757 + PFR28_00803 0.37 -4.1 870,757 + PFR28_00803 0.37 -3.0 870,758 - PFR28_00803 0.37 -0.8 870,758 - PFR28_00803 0.37 -1.9 870,758 - PFR28_00803 0.37 -4.7 870,758 - PFR28_00803 0.37 -3.7 870,758 - PFR28_00803 0.37 -4.0 870,758 - PFR28_00803 0.37 -3.1 870,758 - PFR28_00803 0.37 -3.3 870,758 - PFR28_00803 0.37 -1.8 870,759 + PFR28_00803 0.37 -1.6 870,759 + PFR28_00803 0.37 -1.2 870,759 + PFR28_00803 0.37 -3.1 870,760 - PFR28_00803 0.37 -2.5 870,760 - PFR28_00803 0.37 -0.8 870,760 - PFR28_00803 0.37 -3.3 870,795 + PFR28_00803 0.39 -3.8 870,795 + PFR28_00803 0.39 +0.2
Or see this region's nucleotide sequence