Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24830 and ABID97_RS24835 are separated by 16 nucleotides ABID97_RS24835 and ABID97_RS24840 overlap by 4 nucleotides ABID97_RS24840 and ABID97_RS24845 are separated by 114 nucleotides ABID97_RS24845 and ABID97_RS24850 overlap by 4 nucleotides ABID97_RS24850 and ABID97_RS24855 are separated by 7 nucleotides
ABID97_RS24830: ABID97_RS24830 - cytochrome c, at 5,145,866 to 5,146,804
_RS24830
ABID97_RS24835: ABID97_RS24835 - DNA oxidative demethylase AlkB, at 5,146,821 to 5,147,480
_RS24835
ABID97_RS24840: ABID97_RS24840 - PLP-dependent aminotransferase family protein, at 5,147,477 to 5,148,937
_RS24840
ABID97_RS24845: ABID97_RS24845 - DUF2970 domain-containing protein, at 5,149,052 to 5,149,228
_RS24845
ABID97_RS24850: ABID97_RS24850 - cytochrome c4, at 5,149,225 to 5,149,929
_RS24850
ABID97_RS24855: ABID97_RS24855 - c-type cytochrome, at 5,149,937 to 5,151,223
_RS24855
Position (kb) 5147
5148
5149 Strain fitness (log2 ratio) -2
-1
0
1 at 5146.514 kb on + strand, within ABID97_RS24830 at 5146.515 kb on - strand, within ABID97_RS24830 at 5146.515 kb on - strand, within ABID97_RS24830 at 5146.640 kb on + strand, within ABID97_RS24830 at 5146.769 kb on + strand at 5146.770 kb on - strand at 5147.026 kb on - strand, within ABID97_RS24835 at 5147.047 kb on + strand, within ABID97_RS24835 at 5147.098 kb on + strand, within ABID97_RS24835 at 5147.099 kb on - strand, within ABID97_RS24835 at 5147.592 kb on + strand at 5147.592 kb on + strand at 5147.592 kb on + strand at 5147.593 kb on - strand at 5147.730 kb on + strand, within ABID97_RS24840 at 5147.730 kb on + strand, within ABID97_RS24840 at 5147.866 kb on - strand, within ABID97_RS24840 at 5147.866 kb on - strand, within ABID97_RS24840 at 5147.866 kb on - strand, within ABID97_RS24840 at 5148.069 kb on + strand, within ABID97_RS24840 at 5148.069 kb on + strand, within ABID97_RS24840 at 5148.070 kb on - strand, within ABID97_RS24840 at 5148.082 kb on - strand, within ABID97_RS24840 at 5148.321 kb on + strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.453 kb on + strand, within ABID97_RS24840 at 5148.453 kb on + strand, within ABID97_RS24840 at 5148.744 kb on + strand, within ABID97_RS24840 at 5148.744 kb on + strand, within ABID97_RS24840 at 5148.744 kb on + strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.747 kb on + strand, within ABID97_RS24840 at 5148.747 kb on + strand, within ABID97_RS24840 at 5148.795 kb on + strand at 5148.796 kb on - strand at 5148.796 kb on - strand at 5148.799 kb on - strand at 5148.971 kb on + strand at 5148.972 kb on - strand at 5149.062 kb on + strand at 5149.063 kb on - strand at 5149.414 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.501 kb on + strand, within ABID97_RS24850 at 5149.522 kb on + strand, within ABID97_RS24850 at 5149.523 kb on - strand, within ABID97_RS24850 at 5149.523 kb on - strand, within ABID97_RS24850 at 5149.546 kb on + strand, within ABID97_RS24850 at 5149.720 kb on + strand, within ABID97_RS24850 at 5149.721 kb on - strand, within ABID97_RS24850
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 5,146,514 + ABID97_RS24830 0.69 -0.9 5,146,515 - ABID97_RS24830 0.69 -0.1 5,146,515 - ABID97_RS24830 0.69 +0.0 5,146,640 + ABID97_RS24830 0.82 -0.5 5,146,769 + -0.1 5,146,770 - -1.4 5,147,026 - ABID97_RS24835 0.31 -1.0 5,147,047 + ABID97_RS24835 0.34 -0.1 5,147,098 + ABID97_RS24835 0.42 -0.8 5,147,099 - ABID97_RS24835 0.42 +0.1 5,147,592 + +0.7 5,147,592 + +0.4 5,147,592 + -1.0 5,147,593 - -0.8 5,147,730 + ABID97_RS24840 0.17 -0.4 5,147,730 + ABID97_RS24840 0.17 +0.1 5,147,866 - ABID97_RS24840 0.27 -0.2 5,147,866 - ABID97_RS24840 0.27 -0.2 5,147,866 - ABID97_RS24840 0.27 -0.1 5,148,069 + ABID97_RS24840 0.41 +0.2 5,148,069 + ABID97_RS24840 0.41 +0.4 5,148,070 - ABID97_RS24840 0.41 +0.0 5,148,082 - ABID97_RS24840 0.41 -1.3 5,148,321 + ABID97_RS24840 0.58 -0.2 5,148,322 - ABID97_RS24840 0.58 +0.1 5,148,322 - ABID97_RS24840 0.58 -0.1 5,148,322 - ABID97_RS24840 0.58 +0.4 5,148,322 - ABID97_RS24840 0.58 -0.2 5,148,322 - ABID97_RS24840 0.58 +0.3 5,148,453 + ABID97_RS24840 0.67 -0.3 5,148,453 + ABID97_RS24840 0.67 -0.0 5,148,744 + ABID97_RS24840 0.87 -1.2 5,148,744 + ABID97_RS24840 0.87 -0.3 5,148,744 + ABID97_RS24840 0.87 +1.1 5,148,745 - ABID97_RS24840 0.87 -0.3 5,148,745 - ABID97_RS24840 0.87 +0.2 5,148,745 - ABID97_RS24840 0.87 +0.0 5,148,745 - ABID97_RS24840 0.87 -0.3 5,148,745 - ABID97_RS24840 0.87 +0.1 5,148,745 - ABID97_RS24840 0.87 -1.8 5,148,745 - ABID97_RS24840 0.87 +1.2 5,148,745 - ABID97_RS24840 0.87 -0.2 5,148,747 + ABID97_RS24840 0.87 -0.9 5,148,747 + ABID97_RS24840 0.87 -1.2 5,148,795 + -0.3 5,148,796 - -0.3 5,148,796 - -0.3 5,148,799 - -0.3 5,148,971 + +0.3 5,148,972 - +0.7 5,149,062 + -0.4 5,149,063 - +0.2 5,149,414 + ABID97_RS24850 0.27 -0.7 5,149,474 + ABID97_RS24850 0.35 -0.5 5,149,474 + ABID97_RS24850 0.35 -0.3 5,149,474 + ABID97_RS24850 0.35 -1.5 5,149,474 + ABID97_RS24850 0.35 +0.4 5,149,474 + ABID97_RS24850 0.35 +0.2 5,149,474 + ABID97_RS24850 0.35 -0.5 5,149,475 - ABID97_RS24850 0.35 -1.6 5,149,475 - ABID97_RS24850 0.35 -0.9 5,149,475 - ABID97_RS24850 0.35 -0.8 5,149,475 - ABID97_RS24850 0.35 +1.7 5,149,475 - ABID97_RS24850 0.35 +0.2 5,149,501 + ABID97_RS24850 0.39 -0.4 5,149,522 + ABID97_RS24850 0.42 -0.1 5,149,523 - ABID97_RS24850 0.42 +0.0 5,149,523 - ABID97_RS24850 0.42 -0.1 5,149,546 + ABID97_RS24850 0.46 +1.1 5,149,720 + ABID97_RS24850 0.70 -0.2 5,149,721 - ABID97_RS24850 0.70 -0.0
Or see this region's nucleotide sequence