Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10000

Experiment: R2A with Spectinomycin 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.05 mg/ml
2,458,350	+		CA265_RS09995	0.67	-0.8
2,458,400	-		CA265_RS09995	0.69	+0.7
2,458,400	-		CA265_RS09995	0.69	+0.3
2,458,406	-		CA265_RS09995	0.69	+0.0
2,458,418	-		CA265_RS09995	0.70	-0.3
2,458,428	+		CA265_RS09995	0.70	-0.2
2,458,438	-		CA265_RS09995	0.71	+0.2
2,458,517	-		CA265_RS09995	0.74	-0.7
2,458,589	+		CA265_RS09995	0.77	+0.8
2,458,616	+		CA265_RS09995	0.78	+0.1
2,458,616	+		CA265_RS09995	0.78	-0.5
2,458,616	+		CA265_RS09995	0.78	+0.4
2,458,616	+		CA265_RS09995	0.78	-0.9
2,458,617	-		CA265_RS09995	0.78	-0.3
2,458,651	-		CA265_RS09995	0.79	+0.1
2,458,770	+		CA265_RS09995	0.84	-0.4
2,458,770	+		CA265_RS09995	0.84	+0.5
2,458,770	+		CA265_RS09995	0.84	-0.1
2,458,770	+		CA265_RS09995	0.84	-0.9
2,458,771	-		CA265_RS09995	0.84	+0.5
2,458,771	-		CA265_RS09995	0.84	+0.2
2,458,771	-		CA265_RS09995	0.84	+0.1
2,458,775	-		CA265_RS09995	0.84	+0.1
2,458,775	-		CA265_RS09995	0.84	-1.0
2,458,958	-				-0.5
2,458,958	-				-0.8
2,458,961	+				+0.1
2,458,962	-				-0.3
2,458,971	-				-1.2
2,459,089	+				-0.6
2,459,089	+				-0.1
2,459,198	+				+1.0
2,459,381	+		CA265_RS10000	0.49	-0.4
2,459,511	-		CA265_RS10000	0.86	-1.0
2,459,629	+				-0.6
2,459,633	+				-1.2
2,459,637	+				+1.4
2,459,638	-				-0.5
2,459,662	+				+0.4
2,459,684	-				-0.8
2,459,717	-		CA265_RS10005	0.15	+0.2
2,459,719	+		CA265_RS10005	0.15	-0.9
2,459,752	+		CA265_RS10005	0.25	-0.8
2,459,795	+		CA265_RS10005	0.37	-0.5
2,459,815	-		CA265_RS10005	0.43	+0.0
2,459,929	-		CA265_RS10005	0.76	-0.1
2,459,945	+		CA265_RS10005	0.80	-0.1
2,459,945	+		CA265_RS10005	0.80	+1.4
2,460,034	-				+0.4
2,460,045	+				-0.2
2,460,046	-				+1.3
2,460,057	+				+0.1
2,460,059	-				-0.7
2,460,076	-				+0.2
2,460,076	-				-0.6
2,460,081	+				-0.1
2,460,086	+				+0.3
2,460,229	-		CA265_RS10010	0.13	-0.7
2,460,261	+		CA265_RS10010	0.16	+0.8
2,460,333	-		CA265_RS10010	0.21	-0.0
2,460,377	-		CA265_RS10010	0.24	+0.7
2,460,414	-		CA265_RS10010	0.27	-0.4
2,460,414	-		CA265_RS10010	0.27	+0.2
2,460,456	+		CA265_RS10010	0.30	-0.2