Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02190

Experiment: R2A with Spectinomycin 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02185 and CA265_RS02190 are separated by 8 nucleotidesCA265_RS02190 and CA265_RS02195 are separated by 1 nucleotides CA265_RS02185: CA265_RS02185 - type I glyceraldehyde-3-phosphate dehydrogenase, at 553,349 to 554,347 _RS02185 CA265_RS02190: CA265_RS02190 - hypothetical protein, at 554,356 to 555,198 _RS02190 CA265_RS02195: CA265_RS02195 - 6-phosphofructokinase, at 555,200 to 556,186 _RS02195 Position (kb) 554 555 556Strain fitness (log2 ratio) -2 -1 0 1 2at 554.362 kb on - strandat 554.367 kb on - strandat 554.486 kb on - strand, within CA265_RS02190at 554.650 kb on - strand, within CA265_RS02190at 554.835 kb on - strandat 554.927 kb on - strand, within CA265_RS02190at 555.118 kb on - strandat 555.121 kb on - strandat 555.202 kb on - strandat 555.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Spectinomycin 0.05 mg/ml
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554,362 - -1.9
554,367 - -1.1
554,486 - CA265_RS02190 0.15 -1.2
554,650 - CA265_RS02190 0.35 -1.5
554,835 - +2.0
554,927 - CA265_RS02190 0.68 +0.0
555,118 - -0.5
555,121 - +0.3
555,202 - +0.8
555,202 - -0.1

Or see this region's nucleotide sequence