Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19525 and ABID97_RS19530 are separated by 119 nucleotides ABID97_RS19530 and ABID97_RS19535 are separated by 80 nucleotides ABID97_RS19535 and ABID97_RS19540 are separated by 12 nucleotides
ABID97_RS19525: ABID97_RS19525 - HipA domain-containing protein, at 4,030,732 to 4,031,985
_RS19525
ABID97_RS19530: ABID97_RS19530 - haloacid dehalogenase-like hydrolase, at 4,032,105 to 4,033,373
_RS19530
ABID97_RS19535: ABID97_RS19535 - peroxidase-related enzyme, at 4,033,454 to 4,034,032
_RS19535
ABID97_RS19540: ABID97_RS19540 - phosphoethanolamine--lipid A transferase, at 4,034,045 to 4,035,796
_RS19540
Position (kb)
4032
4033
4034 Strain fitness (log2 ratio)
-1
0
1 at 4031.491 kb on + strand, within ABID97_RS19525 at 4031.524 kb on + strand, within ABID97_RS19525 at 4031.525 kb on - strand, within ABID97_RS19525 at 4031.546 kb on - strand, within ABID97_RS19525 at 4032.032 kb on - strand at 4032.085 kb on + strand at 4032.085 kb on + strand at 4032.086 kb on - strand at 4032.086 kb on - strand at 4032.453 kb on + strand, within ABID97_RS19530 at 4032.454 kb on - strand, within ABID97_RS19530 at 4032.516 kb on + strand, within ABID97_RS19530 at 4032.537 kb on + strand, within ABID97_RS19530 at 4032.592 kb on - strand, within ABID97_RS19530 at 4032.592 kb on - strand, within ABID97_RS19530 at 4032.592 kb on - strand, within ABID97_RS19530 at 4032.592 kb on - strand, within ABID97_RS19530 at 4032.678 kb on + strand, within ABID97_RS19530 at 4032.678 kb on + strand, within ABID97_RS19530 at 4032.679 kb on - strand, within ABID97_RS19530 at 4032.679 kb on - strand, within ABID97_RS19530 at 4032.864 kb on + strand, within ABID97_RS19530 at 4032.864 kb on + strand, within ABID97_RS19530 at 4032.865 kb on - strand, within ABID97_RS19530 at 4032.865 kb on - strand, within ABID97_RS19530 at 4032.865 kb on - strand, within ABID97_RS19530 at 4033.104 kb on + strand, within ABID97_RS19530 at 4033.104 kb on + strand, within ABID97_RS19530 at 4033.105 kb on - strand, within ABID97_RS19530 at 4033.701 kb on - strand, within ABID97_RS19535 at 4033.701 kb on - strand, within ABID97_RS19535 at 4033.737 kb on - strand, within ABID97_RS19535 at 4034.031 kb on - strand at 4034.091 kb on + strand at 4034.158 kb on + strand at 4034.295 kb on + strand, within ABID97_RS19540 at 4034.328 kb on + strand, within ABID97_RS19540 at 4034.329 kb on - strand, within ABID97_RS19540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 4,031,491 + ABID97_RS19525 0.61 -0.1 4,031,524 + ABID97_RS19525 0.63 +0.1 4,031,525 - ABID97_RS19525 0.63 -0.4 4,031,546 - ABID97_RS19525 0.65 -0.1 4,032,032 - +0.2 4,032,085 + -0.0 4,032,085 + +0.4 4,032,086 - -0.1 4,032,086 - +0.1 4,032,453 + ABID97_RS19530 0.27 +0.3 4,032,454 - ABID97_RS19530 0.28 +0.5 4,032,516 + ABID97_RS19530 0.32 -0.1 4,032,537 + ABID97_RS19530 0.34 +0.9 4,032,592 - ABID97_RS19530 0.38 -0.3 4,032,592 - ABID97_RS19530 0.38 -0.4 4,032,592 - ABID97_RS19530 0.38 +0.9 4,032,592 - ABID97_RS19530 0.38 -0.7 4,032,678 + ABID97_RS19530 0.45 -0.3 4,032,678 + ABID97_RS19530 0.45 +0.1 4,032,679 - ABID97_RS19530 0.45 -0.7 4,032,679 - ABID97_RS19530 0.45 +0.4 4,032,864 + ABID97_RS19530 0.60 -0.6 4,032,864 + ABID97_RS19530 0.60 -0.1 4,032,865 - ABID97_RS19530 0.60 +0.6 4,032,865 - ABID97_RS19530 0.60 -0.2 4,032,865 - ABID97_RS19530 0.60 +1.1 4,033,104 + ABID97_RS19530 0.79 +0.3 4,033,104 + ABID97_RS19530 0.79 -1.1 4,033,105 - ABID97_RS19530 0.79 -0.9 4,033,701 - ABID97_RS19535 0.43 -0.1 4,033,701 - ABID97_RS19535 0.43 -0.3 4,033,737 - ABID97_RS19535 0.49 +0.6 4,034,031 - +0.5 4,034,091 + +1.1 4,034,158 + +0.0 4,034,295 + ABID97_RS19540 0.14 -0.2 4,034,328 + ABID97_RS19540 0.16 -0.5 4,034,329 - ABID97_RS19540 0.16 -0.3
Or see this region's nucleotide sequence