Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19530

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19525 and ABID97_RS19530 are separated by 119 nucleotidesABID97_RS19530 and ABID97_RS19535 are separated by 80 nucleotidesABID97_RS19535 and ABID97_RS19540 are separated by 12 nucleotides ABID97_RS19525: ABID97_RS19525 - HipA domain-containing protein, at 4,030,732 to 4,031,985 _RS19525 ABID97_RS19530: ABID97_RS19530 - haloacid dehalogenase-like hydrolase, at 4,032,105 to 4,033,373 _RS19530 ABID97_RS19535: ABID97_RS19535 - peroxidase-related enzyme, at 4,033,454 to 4,034,032 _RS19535 ABID97_RS19540: ABID97_RS19540 - phosphoethanolamine--lipid A transferase, at 4,034,045 to 4,035,796 _RS19540 Position (kb) 4032 4033 4034Strain fitness (log2 ratio) -1 0 1at 4031.491 kb on + strand, within ABID97_RS19525at 4031.524 kb on + strand, within ABID97_RS19525at 4031.525 kb on - strand, within ABID97_RS19525at 4031.546 kb on - strand, within ABID97_RS19525at 4032.032 kb on - strandat 4032.085 kb on + strandat 4032.085 kb on + strandat 4032.086 kb on - strandat 4032.086 kb on - strandat 4032.453 kb on + strand, within ABID97_RS19530at 4032.454 kb on - strand, within ABID97_RS19530at 4032.516 kb on + strand, within ABID97_RS19530at 4032.537 kb on + strand, within ABID97_RS19530at 4032.592 kb on - strand, within ABID97_RS19530at 4032.592 kb on - strand, within ABID97_RS19530at 4032.592 kb on - strand, within ABID97_RS19530at 4032.592 kb on - strand, within ABID97_RS19530at 4032.678 kb on + strand, within ABID97_RS19530at 4032.678 kb on + strand, within ABID97_RS19530at 4032.679 kb on - strand, within ABID97_RS19530at 4032.679 kb on - strand, within ABID97_RS19530at 4032.864 kb on + strand, within ABID97_RS19530at 4032.864 kb on + strand, within ABID97_RS19530at 4032.865 kb on - strand, within ABID97_RS19530at 4032.865 kb on - strand, within ABID97_RS19530at 4032.865 kb on - strand, within ABID97_RS19530at 4033.104 kb on + strand, within ABID97_RS19530at 4033.104 kb on + strand, within ABID97_RS19530at 4033.105 kb on - strand, within ABID97_RS19530at 4033.701 kb on - strand, within ABID97_RS19535at 4033.701 kb on - strand, within ABID97_RS19535at 4033.737 kb on - strand, within ABID97_RS19535at 4034.031 kb on - strandat 4034.091 kb on + strandat 4034.158 kb on + strandat 4034.295 kb on + strand, within ABID97_RS19540at 4034.328 kb on + strand, within ABID97_RS19540at 4034.329 kb on - strand, within ABID97_RS19540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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4,031,491 + ABID97_RS19525 0.61 -0.1
4,031,524 + ABID97_RS19525 0.63 +0.1
4,031,525 - ABID97_RS19525 0.63 -0.4
4,031,546 - ABID97_RS19525 0.65 -0.1
4,032,032 - +0.2
4,032,085 + -0.0
4,032,085 + +0.4
4,032,086 - -0.1
4,032,086 - +0.1
4,032,453 + ABID97_RS19530 0.27 +0.3
4,032,454 - ABID97_RS19530 0.28 +0.5
4,032,516 + ABID97_RS19530 0.32 -0.1
4,032,537 + ABID97_RS19530 0.34 +0.9
4,032,592 - ABID97_RS19530 0.38 -0.3
4,032,592 - ABID97_RS19530 0.38 -0.4
4,032,592 - ABID97_RS19530 0.38 +0.9
4,032,592 - ABID97_RS19530 0.38 -0.7
4,032,678 + ABID97_RS19530 0.45 -0.3
4,032,678 + ABID97_RS19530 0.45 +0.1
4,032,679 - ABID97_RS19530 0.45 -0.7
4,032,679 - ABID97_RS19530 0.45 +0.4
4,032,864 + ABID97_RS19530 0.60 -0.6
4,032,864 + ABID97_RS19530 0.60 -0.1
4,032,865 - ABID97_RS19530 0.60 +0.6
4,032,865 - ABID97_RS19530 0.60 -0.2
4,032,865 - ABID97_RS19530 0.60 +1.1
4,033,104 + ABID97_RS19530 0.79 +0.3
4,033,104 + ABID97_RS19530 0.79 -1.1
4,033,105 - ABID97_RS19530 0.79 -0.9
4,033,701 - ABID97_RS19535 0.43 -0.1
4,033,701 - ABID97_RS19535 0.43 -0.3
4,033,737 - ABID97_RS19535 0.49 +0.6
4,034,031 - +0.5
4,034,091 + +1.1
4,034,158 + +0.0
4,034,295 + ABID97_RS19540 0.14 -0.2
4,034,328 + ABID97_RS19540 0.16 -0.5
4,034,329 - ABID97_RS19540 0.16 -0.3

Or see this region's nucleotide sequence