Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16590

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16585 and ABID97_RS16590 overlap by 4 nucleotidesABID97_RS16590 and ABID97_RS16595 are separated by 11 nucleotidesABID97_RS16595 and ABID97_RS16600 are separated by 63 nucleotides ABID97_RS16585: ABID97_RS16585 - LPS export ABC transporter permease LptF, at 3,430,170 to 3,431,303 _RS16585 ABID97_RS16590: ABID97_RS16590 - LPS export ABC transporter permease LptG, at 3,431,300 to 3,432,409 _RS16590 ABID97_RS16595: ABID97_RS16595 - CbiX/SirB N-terminal domain-containing protein, at 3,432,421 to 3,432,795 _RS16595 ABID97_RS16600: ABID97_RS16600 - CysB family HTH-type transcriptional regulator, at 3,432,859 to 3,433,800 _RS16600 Position (kb) 3431 3432 3433Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3432.553 kb on + strand, within ABID97_RS16595at 3432.553 kb on + strand, within ABID97_RS16595at 3432.554 kb on - strand, within ABID97_RS16595at 3432.554 kb on - strand, within ABID97_RS16595at 3433.321 kb on + strand, within ABID97_RS16600at 3433.321 kb on + strand, within ABID97_RS16600at 3433.321 kb on + strand, within ABID97_RS16600at 3433.322 kb on - strand, within ABID97_RS16600at 3433.348 kb on + strand, within ABID97_RS16600at 3433.348 kb on + strand, within ABID97_RS16600at 3433.349 kb on - strand, within ABID97_RS16600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,432,553 + ABID97_RS16595 0.35 -5.0
3,432,553 + ABID97_RS16595 0.35 -0.6
3,432,554 - ABID97_RS16595 0.35 -4.6
3,432,554 - ABID97_RS16595 0.35 -5.7
3,433,321 + ABID97_RS16600 0.49 -2.7
3,433,321 + ABID97_RS16600 0.49 -4.3
3,433,321 + ABID97_RS16600 0.49 -2.4
3,433,322 - ABID97_RS16600 0.49 -3.0
3,433,348 + ABID97_RS16600 0.52 -4.9
3,433,348 + ABID97_RS16600 0.52 -3.7
3,433,349 - ABID97_RS16600 0.52 -4.1

Or see this region's nucleotide sequence