Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05235

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05225 and ABID97_RS05230 are separated by 278 nucleotidesABID97_RS05230 and ABID97_RS05235 are separated by 200 nucleotidesABID97_RS05235 and ABID97_RS05240 are separated by 79 nucleotidesABID97_RS05240 and ABID97_RS05245 are separated by 15 nucleotides ABID97_RS05225: ABID97_RS05225 - translation initiation factor IF-2, at 1,097,816 to 1,098,172 _RS05225 ABID97_RS05230: ABID97_RS05230 - hypothetical protein, at 1,098,451 to 1,098,636 _RS05230 ABID97_RS05235: ABID97_RS05235 - PA2169 family four-helix-bundle protein, at 1,098,837 to 1,099,316 _RS05235 ABID97_RS05240: ABID97_RS05240 - phosphoglycolate phosphatase, at 1,099,396 to 1,100,112 _RS05240 ABID97_RS05245: ABID97_RS05245 - chalcone isomerase family protein, at 1,100,128 to 1,100,733 _RS05245 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -1 0 1at 1098.129 kb on + strand, within ABID97_RS05225at 1098.236 kb on - strandat 1098.307 kb on + strandat 1098.307 kb on + strandat 1098.308 kb on - strandat 1098.411 kb on + strandat 1098.412 kb on - strandat 1098.412 kb on - strandat 1098.833 kb on + strandat 1098.833 kb on + strandat 1098.847 kb on - strandat 1098.847 kb on - strandat 1098.930 kb on + strand, within ABID97_RS05235at 1099.314 kb on + strandat 1099.315 kb on - strandat 1099.315 kb on - strandat 1099.393 kb on + strandat 1099.393 kb on + strandat 1099.681 kb on + strand, within ABID97_RS05240at 1099.682 kb on - strand, within ABID97_RS05240at 1099.693 kb on + strand, within ABID97_RS05240at 1099.693 kb on + strand, within ABID97_RS05240at 1099.693 kb on + strand, within ABID97_RS05240at 1099.694 kb on - strand, within ABID97_RS05240at 1099.694 kb on - strand, within ABID97_RS05240at 1099.726 kb on + strand, within ABID97_RS05240

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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1,098,129 + ABID97_RS05225 0.88 -0.5
1,098,236 - -0.4
1,098,307 + +1.1
1,098,307 + -1.7
1,098,308 - -0.1
1,098,411 + +0.3
1,098,412 - -0.2
1,098,412 - -0.4
1,098,833 + +0.8
1,098,833 + -0.4
1,098,847 - +1.1
1,098,847 - +0.1
1,098,930 + ABID97_RS05235 0.19 -0.7
1,099,314 + -1.1
1,099,315 - -0.1
1,099,315 - -0.5
1,099,393 + +0.0
1,099,393 + +0.7
1,099,681 + ABID97_RS05240 0.40 +0.7
1,099,682 - ABID97_RS05240 0.40 +0.3
1,099,693 + ABID97_RS05240 0.41 -0.1
1,099,693 + ABID97_RS05240 0.41 +0.2
1,099,693 + ABID97_RS05240 0.41 -0.4
1,099,694 - ABID97_RS05240 0.42 +0.0
1,099,694 - ABID97_RS05240 0.42 +0.5
1,099,726 + ABID97_RS05240 0.46 -0.1

Or see this region's nucleotide sequence