Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05225 and ABID97_RS05230 are separated by 278 nucleotides ABID97_RS05230 and ABID97_RS05235 are separated by 200 nucleotides ABID97_RS05235 and ABID97_RS05240 are separated by 79 nucleotides ABID97_RS05240 and ABID97_RS05245 are separated by 15 nucleotides
ABID97_RS05225: ABID97_RS05225 - translation initiation factor IF-2, at 1,097,816 to 1,098,172
_RS05225
ABID97_RS05230: ABID97_RS05230 - hypothetical protein, at 1,098,451 to 1,098,636
_RS05230
ABID97_RS05235: ABID97_RS05235 - PA2169 family four-helix-bundle protein, at 1,098,837 to 1,099,316
_RS05235
ABID97_RS05240: ABID97_RS05240 - phosphoglycolate phosphatase, at 1,099,396 to 1,100,112
_RS05240
ABID97_RS05245: ABID97_RS05245 - chalcone isomerase family protein, at 1,100,128 to 1,100,733
_RS05245
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-1
0
1 at 1098.129 kb on + strand, within ABID97_RS05225 at 1098.236 kb on - strand at 1098.307 kb on + strand at 1098.307 kb on + strand at 1098.308 kb on - strand at 1098.411 kb on + strand at 1098.412 kb on - strand at 1098.412 kb on - strand at 1098.833 kb on + strand at 1098.833 kb on + strand at 1098.847 kb on - strand at 1098.847 kb on - strand at 1098.930 kb on + strand, within ABID97_RS05235 at 1099.314 kb on + strand at 1099.315 kb on - strand at 1099.315 kb on - strand at 1099.393 kb on + strand at 1099.393 kb on + strand at 1099.681 kb on + strand, within ABID97_RS05240 at 1099.682 kb on - strand, within ABID97_RS05240 at 1099.693 kb on + strand, within ABID97_RS05240 at 1099.693 kb on + strand, within ABID97_RS05240 at 1099.693 kb on + strand, within ABID97_RS05240 at 1099.694 kb on - strand, within ABID97_RS05240 at 1099.694 kb on - strand, within ABID97_RS05240 at 1099.726 kb on + strand, within ABID97_RS05240
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 1,098,129 + ABID97_RS05225 0.88 -0.5 1,098,236 - -0.4 1,098,307 + +1.1 1,098,307 + -1.7 1,098,308 - -0.1 1,098,411 + +0.3 1,098,412 - -0.2 1,098,412 - -0.4 1,098,833 + +0.8 1,098,833 + -0.4 1,098,847 - +1.1 1,098,847 - +0.1 1,098,930 + ABID97_RS05235 0.19 -0.7 1,099,314 + -1.1 1,099,315 - -0.1 1,099,315 - -0.5 1,099,393 + +0.0 1,099,393 + +0.7 1,099,681 + ABID97_RS05240 0.40 +0.7 1,099,682 - ABID97_RS05240 0.40 +0.3 1,099,693 + ABID97_RS05240 0.41 -0.1 1,099,693 + ABID97_RS05240 0.41 +0.2 1,099,693 + ABID97_RS05240 0.41 -0.4 1,099,694 - ABID97_RS05240 0.42 +0.0 1,099,694 - ABID97_RS05240 0.42 +0.5 1,099,726 + ABID97_RS05240 0.46 -0.1
Or see this region's nucleotide sequence