Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS05350

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
1,282,532	+		CA265_RS05345	0.34	+0.0
1,282,533	-		CA265_RS05345	0.34	-1.8
1,282,618	+		CA265_RS05345	0.40	+0.0
1,282,720	+		CA265_RS05345	0.47	+0.7
1,282,734	-		CA265_RS05345	0.48	-1.1
1,282,734	-		CA265_RS05345	0.48	-1.0
1,282,772	+		CA265_RS05345	0.51	+1.2
1,282,773	-		CA265_RS05345	0.51	+0.1
1,282,802	+		CA265_RS05345	0.53	-0.5
1,282,802	+		CA265_RS05345	0.53	+0.1
1,282,803	-		CA265_RS05345	0.53	-1.7
1,282,938	+		CA265_RS05345	0.62	+1.1
1,282,939	-		CA265_RS05345	0.62	-0.1
1,282,977	-		CA265_RS05345	0.65	-0.3
1,282,983	-		CA265_RS05345	0.65	+0.8
1,283,015	+		CA265_RS05345	0.67	-0.3
1,283,015	+		CA265_RS05345	0.67	-0.4
1,283,016	-		CA265_RS05345	0.67	-0.9
1,283,016	-		CA265_RS05345	0.67	-0.3
1,283,016	-		CA265_RS05345	0.67	+0.7
1,283,124	-		CA265_RS05345	0.75	+1.0
1,283,124	-		CA265_RS05345	0.75	+0.4
1,283,129	+		CA265_RS05345	0.75	+0.0
1,283,130	-		CA265_RS05345	0.75	-0.1
1,283,133	+		CA265_RS05345	0.76	+1.4
1,283,278	-		CA265_RS05345	0.86	-0.1
1,283,374	-				-0.1
1,283,377	+				-0.2
1,283,378	-				-0.4
1,283,411	+				+0.2
1,283,426	+				+1.1
1,283,455	-				-0.4
1,283,460	+				-0.0
1,283,461	-				-0.6
1,283,488	+				+1.1
1,283,488	+				+1.1
1,283,488	+				-0.2
1,283,511	+				+0.5
1,283,585	-				-0.7
1,283,682	+		CA265_RS05350	0.13	+0.8
1,283,683	-		CA265_RS05350	0.13	-2.0
1,283,704	-		CA265_RS05350	0.14	-1.0
1,283,756	+		CA265_RS05350	0.18	-0.9
1,283,760	+		CA265_RS05350	0.18	+0.2
1,283,772	+		CA265_RS05350	0.19	+0.2
1,283,773	-		CA265_RS05350	0.19	-1.7
1,283,773	-		CA265_RS05350	0.19	-1.0
1,283,773	-		CA265_RS05350	0.19	-2.2
1,283,827	+		CA265_RS05350	0.23	-0.7
1,283,836	+		CA265_RS05350	0.24	+1.0
1,283,837	-		CA265_RS05350	0.24	-2.7
1,283,867	-		CA265_RS05350	0.26	-1.3
1,283,887	-		CA265_RS05350	0.28	-2.5
1,283,967	+		CA265_RS05350	0.34	-0.1
1,284,044	+		CA265_RS05350	0.40	-0.1
1,284,044	+		CA265_RS05350	0.40	+0.0
1,284,170	+		CA265_RS05350	0.49	-0.8
1,284,170	+		CA265_RS05350	0.49	-1.4
1,284,171	-		CA265_RS05350	0.49	-1.4
1,284,172	+		CA265_RS05350	0.49	-1.6
1,284,172	+		CA265_RS05350	0.49	+1.0
1,284,172	+		CA265_RS05350	0.49	-0.7
1,284,173	-		CA265_RS05350	0.50	-1.3
1,284,173	-		CA265_RS05350	0.50	-1.5
1,284,235	-		CA265_RS05350	0.54	-1.0
1,284,335	+		CA265_RS05350	0.62	+1.0
1,284,336	-		CA265_RS05350	0.62	-0.3
1,284,336	-		CA265_RS05350	0.62	-0.9
1,284,340	-		CA265_RS05350	0.62	-0.7
1,284,475	-		CA265_RS05350	0.72	+0.3
1,284,476	+		CA265_RS05350	0.72	-0.4
1,284,487	-		CA265_RS05350	0.73	-1.3
1,284,520	+		CA265_RS05350	0.76	+0.7
1,284,521	-		CA265_RS05350	0.76	-0.9
1,284,521	-		CA265_RS05350	0.76	-1.6
1,284,565	+		CA265_RS05350	0.79	-0.0
1,284,617	-		CA265_RS05350	0.83	-2.8
1,284,671	-		CA265_RS05350	0.87	-0.8
1,284,702	+		CA265_RS05350	0.89	+0.1
1,284,736	-				-0.9
1,284,792	+				+0.9
1,284,793	-				-0.9
1,284,795	-				-0.7
1,284,799	+				+0.7
1,284,825	+				+0.2
1,284,865	+				+0.2
1,284,865	+				+0.5
1,284,879	+				-0.0
1,284,924	+				+0.4
1,284,945	+				+0.6
1,285,048	-				-2.8
1,285,048	-				-2.1
1,285,051	+				-0.3
1,285,079	+		CA265_RS05355	0.11	+0.6
1,285,099	-		CA265_RS05355	0.12	-1.4
1,285,128	-		CA265_RS05355	0.14	-1.5
1,285,149	+		CA265_RS05355	0.15	+0.7
1,285,183	+		CA265_RS05355	0.17	+0.2
1,285,190	+		CA265_RS05355	0.17	-0.1
1,285,270	-		CA265_RS05355	0.21	-2.6
1,285,270	-		CA265_RS05355	0.21	-1.2
1,285,392	+		CA265_RS05355	0.28	-0.3
1,285,405	+		CA265_RS05355	0.29	-0.8
1,285,406	-		CA265_RS05355	0.29	-2.0
1,285,469	-		CA265_RS05355	0.32	-0.2
1,285,476	-		CA265_RS05355	0.33	-0.8
1,285,476	-		CA265_RS05355	0.33	-2.6
1,285,546	-		CA265_RS05355	0.37	-1.3
1,285,552	+		CA265_RS05355	0.37	+0.2
1,285,552	+		CA265_RS05355	0.37	-0.3
1,285,554	+		CA265_RS05355	0.37	-0.2
1,285,554	+		CA265_RS05355	0.37	+0.6
1,285,554	+		CA265_RS05355	0.37	-0.8
1,285,584	+		CA265_RS05355	0.39	+0.1
1,285,584	+		CA265_RS05355	0.39	-0.4
1,285,585	-		CA265_RS05355	0.39	-1.0
1,285,585	-		CA265_RS05355	0.39	-1.3
1,285,585	-		CA265_RS05355	0.39	-1.0
1,285,589	-		CA265_RS05355	0.39	-1.1
1,285,654	+		CA265_RS05355	0.42	-0.3
1,285,657	-		CA265_RS05355	0.43	+0.2
1,285,732	-		CA265_RS05355	0.47	-0.6
1,285,754	-		CA265_RS05355	0.48	-0.6
1,285,773	+		CA265_RS05355	0.49	-0.3