Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21770

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21760 and ABID97_RS21765 are separated by 3 nucleotidesABID97_RS21765 and ABID97_RS21770 overlap by 17 nucleotidesABID97_RS21770 and ABID97_RS21775 are separated by 20 nucleotides ABID97_RS21760: ABID97_RS21760 - peptide chain release factor 2, at 4,498,068 to 4,499,172 _RS21760 ABID97_RS21765: ABID97_RS21765 - HAD family phosphatase, at 4,499,176 to 4,499,865 _RS21765 ABID97_RS21770: ABID97_RS21770 - aminopeptidase N, at 4,499,849 to 4,502,557 _RS21770 ABID97_RS21775: ABID97_RS21775 - class 1 fructose-bisphosphatase, at 4,502,578 to 4,503,594 _RS21775 Position (kb) 4499 4500 4501 4502 4503Strain fitness (log2 ratio) -2 -1 0 1at 4499.809 kb on + strandat 4499.903 kb on + strandat 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.266 kb on + strand, within ABID97_RS21770at 4500.299 kb on + strand, within ABID97_RS21770at 4500.431 kb on + strand, within ABID97_RS21770at 4500.701 kb on + strand, within ABID97_RS21770at 4500.740 kb on + strand, within ABID97_RS21770at 4500.773 kb on + strand, within ABID97_RS21770at 4500.995 kb on + strand, within ABID97_RS21770at 4501.031 kb on + strand, within ABID97_RS21770at 4501.031 kb on + strand, within ABID97_RS21770at 4501.032 kb on - strand, within ABID97_RS21770at 4501.109 kb on + strand, within ABID97_RS21770at 4501.224 kb on - strand, within ABID97_RS21770at 4501.224 kb on - strand, within ABID97_RS21770at 4501.787 kb on + strand, within ABID97_RS21770at 4501.787 kb on + strand, within ABID97_RS21770at 4501.787 kb on + strand, within ABID97_RS21770at 4501.788 kb on - strand, within ABID97_RS21770at 4501.895 kb on + strand, within ABID97_RS21770at 4502.304 kb on - strandat 4502.304 kb on - strandat 4502.351 kb on + strandat 4502.351 kb on + strandat 4502.568 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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4,499,809 + +0.1
4,499,903 + -1.0
4,500,266 + ABID97_RS21770 0.15 -0.2
4,500,266 + ABID97_RS21770 0.15 +0.8
4,500,266 + ABID97_RS21770 0.15 -0.8
4,500,266 + ABID97_RS21770 0.15 -0.9
4,500,266 + ABID97_RS21770 0.15 -0.6
4,500,299 + ABID97_RS21770 0.17 -2.2
4,500,431 + ABID97_RS21770 0.21 -0.6
4,500,701 + ABID97_RS21770 0.31 -1.0
4,500,740 + ABID97_RS21770 0.33 -1.3
4,500,773 + ABID97_RS21770 0.34 -0.3
4,500,995 + ABID97_RS21770 0.42 -0.7
4,501,031 + ABID97_RS21770 0.44 -0.4
4,501,031 + ABID97_RS21770 0.44 -0.5
4,501,032 - ABID97_RS21770 0.44 +0.6
4,501,109 + ABID97_RS21770 0.47 -1.1
4,501,224 - ABID97_RS21770 0.51 +1.2
4,501,224 - ABID97_RS21770 0.51 -1.7
4,501,787 + ABID97_RS21770 0.72 -0.1
4,501,787 + ABID97_RS21770 0.72 -0.4
4,501,787 + ABID97_RS21770 0.72 -0.9
4,501,788 - ABID97_RS21770 0.72 -0.4
4,501,895 + ABID97_RS21770 0.76 -0.8
4,502,304 - +0.3
4,502,304 - -0.8
4,502,351 + -0.0
4,502,351 + -0.2
4,502,568 + -0.7

Or see this region's nucleotide sequence