Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15920 and ABID97_RS15925 are separated by 59 nucleotides ABID97_RS15925 and ABID97_RS15930 are separated by 120 nucleotides ABID97_RS15930 and ABID97_RS15935 are separated by 64 nucleotides ABID97_RS15935 and ABID97_RS15940 are separated by 11 nucleotides ABID97_RS15940 and ABID97_RS15945 are separated by 4 nucleotides
ABID97_RS15920: ABID97_RS15920 - GIY-YIG nuclease family protein, at 3,299,201 to 3,299,563
_RS15920
ABID97_RS15925: ABID97_RS15925 - hypothetical protein, at 3,299,623 to 3,300,153
_RS15925
ABID97_RS15930: ABID97_RS15930 - Tex family protein, at 3,300,274 to 3,302,649
_RS15930
ABID97_RS15935: ABID97_RS15935 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,302,714 to 3,302,971
_RS15935
ABID97_RS15940: ABID97_RS15940 - type II toxin-antitoxin system VapC family toxin, at 3,302,983 to 3,303,396
_RS15940
ABID97_RS15945: ABID97_RS15945 - patatin-like phospholipase family protein, at 3,303,401 to 3,304,474
_RS15945
Position (kb)
3300
3301
3302
3303 Strain fitness (log2 ratio)
-2
-1
0
1 at 3299.457 kb on + strand, within ABID97_RS15920 at 3299.457 kb on + strand, within ABID97_RS15920 at 3299.457 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.520 kb on + strand, within ABID97_RS15920 at 3299.521 kb on - strand, within ABID97_RS15920 at 3299.616 kb on + strand at 3300.218 kb on + strand at 3300.218 kb on + strand at 3300.577 kb on + strand, within ABID97_RS15930 at 3300.577 kb on + strand, within ABID97_RS15930 at 3300.577 kb on + strand, within ABID97_RS15930 at 3300.578 kb on - strand, within ABID97_RS15930 at 3300.926 kb on - strand, within ABID97_RS15930 at 3300.926 kb on - strand, within ABID97_RS15930 at 3302.647 kb on + strand at 3302.987 kb on - strand at 3303.196 kb on + strand, within ABID97_RS15940 at 3303.196 kb on + strand, within ABID97_RS15940 at 3303.197 kb on - strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.272 kb on - strand, within ABID97_RS15940 at 3303.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 3,299,457 + ABID97_RS15920 0.71 -0.4 3,299,457 + ABID97_RS15920 0.71 +0.4 3,299,457 + ABID97_RS15920 0.71 -1.8 3,299,520 + ABID97_RS15920 0.88 -0.1 3,299,520 + ABID97_RS15920 0.88 +0.7 3,299,520 + ABID97_RS15920 0.88 -0.5 3,299,520 + ABID97_RS15920 0.88 -1.5 3,299,521 - ABID97_RS15920 0.88 +1.7 3,299,616 + +1.0 3,300,218 + +0.5 3,300,218 + -0.2 3,300,577 + ABID97_RS15930 0.13 +0.3 3,300,577 + ABID97_RS15930 0.13 +0.1 3,300,577 + ABID97_RS15930 0.13 -0.5 3,300,578 - ABID97_RS15930 0.13 -0.4 3,300,926 - ABID97_RS15930 0.27 +1.0 3,300,926 - ABID97_RS15930 0.27 +0.2 3,302,647 + +0.6 3,302,987 - -1.8 3,303,196 + ABID97_RS15940 0.51 +0.3 3,303,196 + ABID97_RS15940 0.51 -0.6 3,303,197 - ABID97_RS15940 0.52 +0.4 3,303,271 + ABID97_RS15940 0.70 -0.6 3,303,271 + ABID97_RS15940 0.70 +0.7 3,303,271 + ABID97_RS15940 0.70 -0.2 3,303,272 - ABID97_RS15940 0.70 +0.2 3,303,419 + +1.7
Or see this region's nucleotide sequence