Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15930

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15920 and ABID97_RS15925 are separated by 59 nucleotidesABID97_RS15925 and ABID97_RS15930 are separated by 120 nucleotidesABID97_RS15930 and ABID97_RS15935 are separated by 64 nucleotidesABID97_RS15935 and ABID97_RS15940 are separated by 11 nucleotidesABID97_RS15940 and ABID97_RS15945 are separated by 4 nucleotides ABID97_RS15920: ABID97_RS15920 - GIY-YIG nuclease family protein, at 3,299,201 to 3,299,563 _RS15920 ABID97_RS15925: ABID97_RS15925 - hypothetical protein, at 3,299,623 to 3,300,153 _RS15925 ABID97_RS15930: ABID97_RS15930 - Tex family protein, at 3,300,274 to 3,302,649 _RS15930 ABID97_RS15935: ABID97_RS15935 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,302,714 to 3,302,971 _RS15935 ABID97_RS15940: ABID97_RS15940 - type II toxin-antitoxin system VapC family toxin, at 3,302,983 to 3,303,396 _RS15940 ABID97_RS15945: ABID97_RS15945 - patatin-like phospholipase family protein, at 3,303,401 to 3,304,474 _RS15945 Position (kb) 3300 3301 3302 3303Strain fitness (log2 ratio) -2 -1 0 1at 3299.457 kb on + strand, within ABID97_RS15920at 3299.457 kb on + strand, within ABID97_RS15920at 3299.457 kb on + strand, within ABID97_RS15920at 3299.520 kb on + strand, within ABID97_RS15920at 3299.520 kb on + strand, within ABID97_RS15920at 3299.520 kb on + strand, within ABID97_RS15920at 3299.520 kb on + strand, within ABID97_RS15920at 3299.521 kb on - strand, within ABID97_RS15920at 3299.616 kb on + strandat 3300.218 kb on + strandat 3300.218 kb on + strandat 3300.577 kb on + strand, within ABID97_RS15930at 3300.577 kb on + strand, within ABID97_RS15930at 3300.577 kb on + strand, within ABID97_RS15930at 3300.578 kb on - strand, within ABID97_RS15930at 3300.926 kb on - strand, within ABID97_RS15930at 3300.926 kb on - strand, within ABID97_RS15930at 3302.647 kb on + strandat 3302.987 kb on - strandat 3303.196 kb on + strand, within ABID97_RS15940at 3303.196 kb on + strand, within ABID97_RS15940at 3303.197 kb on - strand, within ABID97_RS15940at 3303.271 kb on + strand, within ABID97_RS15940at 3303.271 kb on + strand, within ABID97_RS15940at 3303.271 kb on + strand, within ABID97_RS15940at 3303.272 kb on - strand, within ABID97_RS15940at 3303.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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3,299,457 + ABID97_RS15920 0.71 -0.4
3,299,457 + ABID97_RS15920 0.71 +0.4
3,299,457 + ABID97_RS15920 0.71 -1.8
3,299,520 + ABID97_RS15920 0.88 -0.1
3,299,520 + ABID97_RS15920 0.88 +0.7
3,299,520 + ABID97_RS15920 0.88 -0.5
3,299,520 + ABID97_RS15920 0.88 -1.5
3,299,521 - ABID97_RS15920 0.88 +1.7
3,299,616 + +1.0
3,300,218 + +0.5
3,300,218 + -0.2
3,300,577 + ABID97_RS15930 0.13 +0.3
3,300,577 + ABID97_RS15930 0.13 +0.1
3,300,577 + ABID97_RS15930 0.13 -0.5
3,300,578 - ABID97_RS15930 0.13 -0.4
3,300,926 - ABID97_RS15930 0.27 +1.0
3,300,926 - ABID97_RS15930 0.27 +0.2
3,302,647 + +0.6
3,302,987 - -1.8
3,303,196 + ABID97_RS15940 0.51 +0.3
3,303,196 + ABID97_RS15940 0.51 -0.6
3,303,197 - ABID97_RS15940 0.52 +0.4
3,303,271 + ABID97_RS15940 0.70 -0.6
3,303,271 + ABID97_RS15940 0.70 +0.7
3,303,271 + ABID97_RS15940 0.70 -0.2
3,303,272 - ABID97_RS15940 0.70 +0.2
3,303,419 + +1.7

Or see this region's nucleotide sequence