Experiment: R2A with Chloramphenicol 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16920 and CA265_RS16925 are separated by 4 nucleotides CA265_RS16925 and CA265_RS16930 are separated by 172 nucleotides CA265_RS16930 and CA265_RS16935 overlap by 1 nucleotides CA265_RS16935 and CA265_RS16940 are separated by 131 nucleotides
CA265_RS16920: CA265_RS16920 - 50S ribosomal protein L4, at 4,226,904 to 4,227,533
_RS16920
CA265_RS16925: CA265_RS16925 - 50S ribosomal protein L3, at 4,227,538 to 4,228,155
_RS16925
CA265_RS16930: CA265_RS16930 - hypothetical protein, at 4,228,328 to 4,228,723
_RS16930
CA265_RS16935: CA265_RS16935 - permease, at 4,228,723 to 4,229,556
_RS16935
CA265_RS16940: CA265_RS16940 - plasmid stabilization system protein, at 4,229,688 to 4,229,966
_RS16940
Position (kb) 4228
4229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4228.300 kb on - strand at 4228.329 kb on + strand at 4228.361 kb on + strand at 4228.361 kb on + strand at 4228.396 kb on - strand, within CA265_RS16930 at 4228.402 kb on - strand, within CA265_RS16930 at 4228.592 kb on - strand, within CA265_RS16930 at 4228.625 kb on + strand, within CA265_RS16930 at 4228.626 kb on - strand, within CA265_RS16930 at 4228.642 kb on + strand, within CA265_RS16930 at 4228.718 kb on - strand at 4228.718 kb on - strand at 4228.718 kb on - strand at 4228.724 kb on + strand at 4228.726 kb on + strand at 4228.743 kb on + strand at 4228.746 kb on - strand at 4228.748 kb on - strand at 4228.748 kb on - strand at 4228.966 kb on + strand, within CA265_RS16935 at 4228.989 kb on + strand, within CA265_RS16935 at 4228.990 kb on - strand, within CA265_RS16935 at 4229.100 kb on - strand, within CA265_RS16935 at 4229.110 kb on + strand, within CA265_RS16935 at 4229.169 kb on + strand, within CA265_RS16935 at 4229.170 kb on - strand, within CA265_RS16935 at 4229.173 kb on + strand at 4229.240 kb on - strand, within CA265_RS16935 at 4229.240 kb on - strand, within CA265_RS16935 at 4229.300 kb on - strand, within CA265_RS16935 at 4229.337 kb on + strand, within CA265_RS16935 at 4229.356 kb on + strand, within CA265_RS16935 at 4229.361 kb on - strand, within CA265_RS16935 at 4229.459 kb on - strand, within CA265_RS16935 at 4229.460 kb on + strand, within CA265_RS16935 at 4229.463 kb on + strand, within CA265_RS16935 at 4229.464 kb on - strand, within CA265_RS16935 at 4229.464 kb on - strand, within CA265_RS16935 at 4229.464 kb on - strand, within CA265_RS16935 at 4229.521 kb on + strand at 4229.522 kb on - strand at 4229.566 kb on + strand at 4229.567 kb on - strand at 4229.611 kb on + strand at 4229.619 kb on - strand at 4229.619 kb on - strand at 4229.621 kb on - strand at 4229.625 kb on + strand at 4229.638 kb on + strand at 4229.639 kb on - strand at 4229.683 kb on - strand at 4229.685 kb on - strand at 4229.696 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.005 mg/ml remove 4,228,300 - -0.7 4,228,329 + +0.0 4,228,361 + -0.4 4,228,361 + +1.4 4,228,396 - CA265_RS16930 0.17 -0.4 4,228,402 - CA265_RS16930 0.19 -0.2 4,228,592 - CA265_RS16930 0.67 -0.9 4,228,625 + CA265_RS16930 0.75 -0.5 4,228,626 - CA265_RS16930 0.75 -0.7 4,228,642 + CA265_RS16930 0.79 -0.4 4,228,718 - +1.0 4,228,718 - -1.3 4,228,718 - +1.1 4,228,724 + -0.2 4,228,726 + -0.6 4,228,743 + -0.0 4,228,746 - -0.6 4,228,748 - +0.0 4,228,748 - -0.3 4,228,966 + CA265_RS16935 0.29 -0.0 4,228,989 + CA265_RS16935 0.32 -0.5 4,228,990 - CA265_RS16935 0.32 -0.6 4,229,100 - CA265_RS16935 0.45 +0.2 4,229,110 + CA265_RS16935 0.46 +0.1 4,229,169 + CA265_RS16935 0.53 -0.3 4,229,170 - CA265_RS16935 0.54 -0.3 4,229,173 + +0.4 4,229,240 - CA265_RS16935 0.62 -0.4 4,229,240 - CA265_RS16935 0.62 +0.4 4,229,300 - CA265_RS16935 0.69 -1.4 4,229,337 + CA265_RS16935 0.74 +0.2 4,229,356 + CA265_RS16935 0.76 +1.7 4,229,361 - CA265_RS16935 0.76 +1.0 4,229,459 - CA265_RS16935 0.88 -0.5 4,229,460 + CA265_RS16935 0.88 +0.2 4,229,463 + CA265_RS16935 0.89 -0.1 4,229,464 - CA265_RS16935 0.89 +0.9 4,229,464 - CA265_RS16935 0.89 -0.5 4,229,464 - CA265_RS16935 0.89 +0.7 4,229,521 + -2.2 4,229,522 - +0.1 4,229,566 + +0.2 4,229,567 - +0.4 4,229,611 + -0.3 4,229,619 - +2.3 4,229,619 - -0.9 4,229,621 - +0.1 4,229,625 + +0.3 4,229,638 + +0.4 4,229,639 - -0.1 4,229,683 - +0.6 4,229,685 - -0.0 4,229,696 + +0.0
Or see this region's nucleotide sequence