Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08810

Experiment: D-Serine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Serine (C)
1,696,098	+		ABIE40_RS08805	0.18	-4.4
1,696,099	-		ABIE40_RS08805	0.18	-2.6
1,696,099	-		ABIE40_RS08805	0.18	-2.5
1,696,208	+		ABIE40_RS08805	0.28	-1.1
1,696,208	+		ABIE40_RS08805	0.28	-3.3
1,696,208	+		ABIE40_RS08805	0.28	-1.1
1,696,208	+		ABIE40_RS08805	0.28	-0.8
1,696,208	+		ABIE40_RS08805	0.28	-2.4
1,696,209	-		ABIE40_RS08805	0.28	-3.3
1,696,209	-		ABIE40_RS08805	0.28	-2.7
1,696,209	-		ABIE40_RS08805	0.28	-1.1
1,696,209	-		ABIE40_RS08805	0.28	-3.7
1,696,209	-		ABIE40_RS08805	0.28	-1.1
1,696,257	+		ABIE40_RS08805	0.32	-0.1
1,696,258	-		ABIE40_RS08805	0.32	-1.9
1,696,258	-		ABIE40_RS08805	0.32	-3.0
1,696,259	+		ABIE40_RS08805	0.32	-2.3
1,696,259	+		ABIE40_RS08805	0.32	-1.1
1,696,259	+		ABIE40_RS08805	0.32	-0.9
1,696,259	+		ABIE40_RS08805	0.32	-3.0
1,696,259	+		ABIE40_RS08805	0.32	-4.1
1,696,259	+		ABIE40_RS08805	0.32	-2.4
1,696,259	+		ABIE40_RS08805	0.32	-1.1
1,696,259	+		ABIE40_RS08805	0.32	-1.4
1,696,259	+		ABIE40_RS08805	0.32	-4.5
1,696,260	-		ABIE40_RS08805	0.32	-2.4
1,696,260	-		ABIE40_RS08805	0.32	-2.6
1,696,260	-		ABIE40_RS08805	0.32	-1.8
1,696,260	-		ABIE40_RS08805	0.32	-1.9
1,696,713	+		ABIE40_RS08805	0.72	-2.8
1,696,714	-		ABIE40_RS08805	0.72	-3.0
1,696,714	-		ABIE40_RS08805	0.72	-4.8
1,696,715	+		ABIE40_RS08805	0.72	-2.4
1,696,716	-		ABIE40_RS08805	0.72	-2.0
1,696,716	-		ABIE40_RS08805	0.72	-2.4
1,696,725	-		ABIE40_RS08805	0.73	-2.9
1,696,725	-		ABIE40_RS08805	0.73	-2.3
1,696,725	-		ABIE40_RS08805	0.73	-1.9
1,696,907	-		ABIE40_RS08805	0.88	-1.1
1,696,907	-		ABIE40_RS08805	0.88	-1.9
1,697,022	-				-2.4
1,697,022	-				-0.8
1,697,043	+				+0.2
1,697,043	+				-0.4
1,697,043	+				-1.1
1,697,043	+				-2.7
1,697,043	+				-3.1
1,697,043	+				-2.7
1,697,043	+				-2.4
1,697,043	+				+1.2
1,697,043	+				-0.4
1,697,043	+				-1.4
1,697,043	+				-1.1
1,697,044	-				-0.4
1,697,044	-				+0.6
1,697,044	-				-0.8
1,697,044	-				-2.1
1,697,044	-				-3.0
1,697,044	-				-1.4
1,697,044	-				+0.8
1,697,044	-				-3.8
1,697,044	-				-0.2
1,697,044	-				-4.5
1,697,044	-				-2.4
1,697,044	-				-3.4
1,697,116	-				-1.3
1,697,245	-		ABIE40_RS08810	0.17	-2.5
1,697,245	-		ABIE40_RS08810	0.17	-2.3
1,697,409	+		ABIE40_RS08810	0.31	-1.8
1,697,409	+		ABIE40_RS08810	0.31	-3.5
1,697,410	-		ABIE40_RS08810	0.31	-1.9
1,697,410	-		ABIE40_RS08810	0.31	-1.6
1,697,410	-		ABIE40_RS08810	0.31	-3.4
1,697,791	-		ABIE40_RS08810	0.62	-3.2
1,697,841	+		ABIE40_RS08810	0.66	-1.8
1,697,841	+		ABIE40_RS08810	0.66	-1.8
1,697,841	+		ABIE40_RS08810	0.66	-1.6
1,697,841	+		ABIE40_RS08810	0.66	-0.9
1,697,842	-		ABIE40_RS08810	0.67	-2.0
1,697,842	-		ABIE40_RS08810	0.67	-3.5
1,697,842	-		ABIE40_RS08810	0.67	-2.2
1,697,842	-		ABIE40_RS08810	0.67	-3.3
1,697,842	-		ABIE40_RS08810	0.67	-1.6
1,697,842	-		ABIE40_RS08810	0.67	-2.9
1,697,842	-		ABIE40_RS08810	0.67	-3.1
1,697,872	+		ABIE40_RS08810	0.69	-3.9
1,697,873	-		ABIE40_RS08810	0.69	-2.4
1,697,873	-		ABIE40_RS08810	0.69	-3.3
1,697,982	+		ABIE40_RS08810	0.78	-1.4
1,698,113	+		ABIE40_RS08810	0.89	-2.9
1,698,114	-		ABIE40_RS08810	0.89	-3.4
1,698,114	-		ABIE40_RS08810	0.89	-2.6
1,698,134	+				-1.4
1,698,134	+				-2.4
1,698,135	-				-0.4
1,698,135	-				-5.2
1,698,135	-				+0.2
1,698,135	-				-1.1
1,698,164	+				-2.9
1,698,177	+				-1.6
1,698,177	+				-3.2
1,698,177	+				+1.2
1,698,178	-				-1.1
1,698,178	-				-3.2
1,698,178	-				-1.2
1,698,253	+				-2.4
1,698,254	-				-1.9
1,698,261	+				-2.9
1,698,261	+				-1.4
1,698,261	+				-1.4
1,698,261	+				-2.0
1,698,261	+				-1.3
1,698,261	+				-3.5
1,698,262	-				-1.4
1,698,262	-				-0.5
1,698,262	-				-0.2
1,698,262	-				+1.4
1,698,339	+				-3.2
1,698,450	+		ABIE40_RS08815	0.11	-3.4
1,698,451	-		ABIE40_RS08815	0.11	-1.4
1,698,451	-		ABIE40_RS08815	0.11	-2.4
1,698,477	+		ABIE40_RS08815	0.14	-2.0
1,698,478	-		ABIE40_RS08815	0.14	-3.2
1,698,550	+		ABIE40_RS08815	0.21	+1.2
1,698,627	+		ABIE40_RS08815	0.28	-2.3
1,698,628	-		ABIE40_RS08815	0.28	-1.9
1,698,759	+		ABIE40_RS08815	0.41	-2.6
1,698,760	-		ABIE40_RS08815	0.41	-4.2
1,698,760	-		ABIE40_RS08815	0.41	-0.8
1,698,783	+		ABIE40_RS08815	0.43	-1.1
1,698,784	-		ABIE40_RS08815	0.43	+0.8
1,698,808	-		ABIE40_RS08815	0.46	-3.9
1,698,808	-		ABIE40_RS08815	0.46	-2.1
1,698,852	+		ABIE40_RS08815	0.50	-1.7
1,698,853	-		ABIE40_RS08815	0.50	-2.9
1,698,876	+		ABIE40_RS08815	0.52	-1.6
1,698,877	-		ABIE40_RS08815	0.53	-2.6
1,698,914	+		ABIE40_RS08815	0.56	-2.2
1,698,915	-		ABIE40_RS08815	0.56	-0.8
1,698,915	-		ABIE40_RS08815	0.56	-0.8
1,698,915	-		ABIE40_RS08815	0.56	-2.1
1,698,993	+		ABIE40_RS08815	0.64	-1.1
1,698,993	+		ABIE40_RS08815	0.64	-1.8
1,698,993	+		ABIE40_RS08815	0.64	-2.2
1,698,993	+		ABIE40_RS08815	0.64	-1.4
1,698,993	+		ABIE40_RS08815	0.64	-0.8
1,698,993	+		ABIE40_RS08815	0.64	-1.0
1,698,994	-		ABIE40_RS08815	0.64	-1.4
1,698,994	-		ABIE40_RS08815	0.64	-1.4
1,698,996	+		ABIE40_RS08815	0.64	-2.7
1,698,996	+		ABIE40_RS08815	0.64	-0.9
1,698,996	+		ABIE40_RS08815	0.64	-0.7
1,698,997	-		ABIE40_RS08815	0.64	-1.8
1,699,057	+		ABIE40_RS08815	0.70	-1.3
1,699,058	-		ABIE40_RS08815	0.70	-3.2
1,699,126	-		ABIE40_RS08815	0.77	-0.8
1,699,126	-		ABIE40_RS08815	0.77	-2.2
1,699,126	-		ABIE40_RS08815	0.77	-2.3
1,699,126	-		ABIE40_RS08815	0.77	-1.9
1,699,126	-		ABIE40_RS08815	0.77	-2.2