Experiment: R2A with Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01705 and CA265_RS01710 are separated by 2 nucleotides CA265_RS01710 and CA265_RS01715 are separated by 2 nucleotides CA265_RS01715 and CA265_RS01720 overlap by 8 nucleotides
CA265_RS01705: CA265_RS01705 - hypothetical protein, at 434,536 to 435,519
_RS01705
CA265_RS01710: CA265_RS01710 - hypothetical protein, at 435,522 to 436,532
_RS01710
CA265_RS01715: CA265_RS01715 - hypothetical protein, at 436,535 to 437,284
_RS01715
CA265_RS01720: CA265_RS01720 - hypothetical protein, at 437,277 to 437,942
_RS01720
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1 at 434.558 kb on + strand at 434.602 kb on + strand at 434.631 kb on - strand at 434.656 kb on - strand, within CA265_RS01705 at 434.656 kb on - strand, within CA265_RS01705 at 434.697 kb on + strand, within CA265_RS01705 at 434.697 kb on + strand at 434.698 kb on - strand, within CA265_RS01705 at 434.798 kb on - strand, within CA265_RS01705 at 434.798 kb on - strand, within CA265_RS01705 at 434.814 kb on + strand, within CA265_RS01705 at 434.842 kb on - strand, within CA265_RS01705 at 434.845 kb on + strand, within CA265_RS01705 at 434.845 kb on + strand, within CA265_RS01705 at 434.846 kb on - strand, within CA265_RS01705 at 434.948 kb on + strand, within CA265_RS01705 at 434.949 kb on - strand, within CA265_RS01705 at 434.949 kb on - strand, within CA265_RS01705 at 434.979 kb on + strand, within CA265_RS01705 at 435.013 kb on + strand, within CA265_RS01705 at 435.033 kb on - strand, within CA265_RS01705 at 435.033 kb on - strand, within CA265_RS01705 at 435.043 kb on + strand, within CA265_RS01705 at 435.043 kb on + strand, within CA265_RS01705 at 435.251 kb on - strand, within CA265_RS01705 at 435.264 kb on - strand, within CA265_RS01705 at 435.400 kb on + strand, within CA265_RS01705 at 435.444 kb on + strand at 435.458 kb on - strand at 435.459 kb on + strand at 435.464 kb on - strand at 435.476 kb on + strand at 435.476 kb on + strand at 435.611 kb on - strand at 435.619 kb on + strand at 435.756 kb on - strand, within CA265_RS01710 at 435.779 kb on + strand, within CA265_RS01710 at 435.796 kb on - strand, within CA265_RS01710 at 435.812 kb on + strand, within CA265_RS01710 at 435.888 kb on - strand, within CA265_RS01710 at 435.907 kb on - strand, within CA265_RS01710 at 436.049 kb on + strand, within CA265_RS01710 at 436.065 kb on - strand, within CA265_RS01710 at 436.135 kb on + strand, within CA265_RS01710 at 436.198 kb on - strand, within CA265_RS01710 at 436.239 kb on + strand, within CA265_RS01710 at 436.239 kb on + strand, within CA265_RS01710 at 436.264 kb on + strand, within CA265_RS01710 at 436.310 kb on - strand at 436.367 kb on - strand, within CA265_RS01710 at 436.367 kb on - strand, within CA265_RS01710 at 436.370 kb on + strand, within CA265_RS01710 at 436.380 kb on - strand, within CA265_RS01710 at 436.513 kb on - strand at 436.546 kb on + strand at 436.553 kb on + strand at 436.566 kb on + strand at 436.566 kb on + strand at 436.585 kb on + strand at 436.615 kb on + strand, within CA265_RS01715 at 436.696 kb on + strand, within CA265_RS01715 at 436.735 kb on + strand, within CA265_RS01715 at 436.735 kb on + strand, within CA265_RS01715 at 436.737 kb on - strand, within CA265_RS01715 at 436.859 kb on + strand, within CA265_RS01715 at 436.873 kb on - strand, within CA265_RS01715 at 436.957 kb on + strand, within CA265_RS01715 at 437.066 kb on + strand, within CA265_RS01715 at 437.066 kb on + strand, within CA265_RS01715 at 437.264 kb on + strand at 437.265 kb on - strand at 437.275 kb on + strand at 437.276 kb on - strand at 437.412 kb on + strand, within CA265_RS01720 at 437.413 kb on - strand, within CA265_RS01720 at 437.436 kb on - strand, within CA265_RS01720 at 437.448 kb on - strand, within CA265_RS01720 at 437.456 kb on + strand, within CA265_RS01720 at 437.480 kb on + strand, within CA265_RS01720 at 437.480 kb on + strand, within CA265_RS01720 at 437.481 kb on - strand, within CA265_RS01720 at 437.529 kb on + strand, within CA265_RS01720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.001 mg/ml remove 434,558 + +0.2 434,602 + -0.3 434,631 - -0.2 434,656 - CA265_RS01705 0.12 -0.4 434,656 - CA265_RS01705 0.12 +0.1 434,697 + CA265_RS01705 0.16 -0.1 434,697 + +0.2 434,698 - CA265_RS01705 0.16 +0.1 434,798 - CA265_RS01705 0.27 -0.6 434,798 - CA265_RS01705 0.27 +0.1 434,814 + CA265_RS01705 0.28 +0.2 434,842 - CA265_RS01705 0.31 -0.8 434,845 + CA265_RS01705 0.31 -0.0 434,845 + CA265_RS01705 0.31 -0.1 434,846 - CA265_RS01705 0.32 -0.1 434,948 + CA265_RS01705 0.42 -1.8 434,949 - CA265_RS01705 0.42 -0.6 434,949 - CA265_RS01705 0.42 -1.4 434,979 + CA265_RS01705 0.45 -0.5 435,013 + CA265_RS01705 0.48 -0.2 435,033 - CA265_RS01705 0.51 -0.3 435,033 - CA265_RS01705 0.51 +0.2 435,043 + CA265_RS01705 0.52 +0.1 435,043 + CA265_RS01705 0.52 -1.1 435,251 - CA265_RS01705 0.73 +0.1 435,264 - CA265_RS01705 0.74 -0.6 435,400 + CA265_RS01705 0.88 -0.4 435,444 + -0.4 435,458 - +1.1 435,459 + -0.2 435,464 - +0.0 435,476 + -0.5 435,476 + -1.3 435,611 - +0.8 435,619 + +0.1 435,756 - CA265_RS01710 0.23 -0.2 435,779 + CA265_RS01710 0.25 -1.3 435,796 - CA265_RS01710 0.27 -0.9 435,812 + CA265_RS01710 0.29 -1.0 435,888 - CA265_RS01710 0.36 -1.1 435,907 - CA265_RS01710 0.38 -0.9 436,049 + CA265_RS01710 0.52 -0.0 436,065 - CA265_RS01710 0.54 +0.9 436,135 + CA265_RS01710 0.61 -1.1 436,198 - CA265_RS01710 0.67 -0.1 436,239 + CA265_RS01710 0.71 -0.2 436,239 + CA265_RS01710 0.71 +0.4 436,264 + CA265_RS01710 0.73 +0.7 436,310 - +0.6 436,367 - CA265_RS01710 0.84 -2.3 436,367 - CA265_RS01710 0.84 -0.3 436,370 + CA265_RS01710 0.84 +0.3 436,380 - CA265_RS01710 0.85 -1.0 436,513 - -1.0 436,546 + -0.1 436,553 + +0.8 436,566 + -1.4 436,566 + -0.4 436,585 + +0.5 436,615 + CA265_RS01715 0.11 -0.0 436,696 + CA265_RS01715 0.21 +0.1 436,735 + CA265_RS01715 0.27 -0.4 436,735 + CA265_RS01715 0.27 -0.7 436,737 - CA265_RS01715 0.27 +0.1 436,859 + CA265_RS01715 0.43 -0.6 436,873 - CA265_RS01715 0.45 -1.0 436,957 + CA265_RS01715 0.56 +0.5 437,066 + CA265_RS01715 0.71 +1.6 437,066 + CA265_RS01715 0.71 -0.0 437,264 + -0.2 437,265 - -0.5 437,275 + -0.5 437,276 - -0.3 437,412 + CA265_RS01720 0.20 +0.2 437,413 - CA265_RS01720 0.20 -0.3 437,436 - CA265_RS01720 0.24 -1.2 437,448 - CA265_RS01720 0.26 +0.3 437,456 + CA265_RS01720 0.27 +0.6 437,480 + CA265_RS01720 0.30 -0.1 437,480 + CA265_RS01720 0.30 +0.3 437,481 - CA265_RS01720 0.31 +0.1 437,529 + CA265_RS01720 0.38 -1.0
Or see this region's nucleotide sequence