Experiment: 30_mag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01940 and AMB_RS01945 are separated by 2 nucleotides AMB_RS01945 and AMB_RS01950 are separated by 26 nucleotides AMB_RS01950 and AMB_RS01955 are separated by 3 nucleotides AMB_RS01955 and AMB_RS01960 overlap by 4 nucleotides AMB_RS01960 and AMB_RS01965 are separated by 6 nucleotides
AMB_RS01940: AMB_RS01940 - hypothetical protein, at 411,019 to 411,978
_RS01940
AMB_RS01945: AMB_RS01945 - hypothetical protein, at 411,981 to 412,496
_RS01945
AMB_RS01950: AMB_RS01950 - hypothetical protein, at 412,523 to 412,708
_RS01950
AMB_RS01955: AMB_RS01955 - replication protein, at 412,712 to 415,702
_RS01955
AMB_RS01960: AMB_RS01960 - hypothetical protein, at 415,699 to 416,196
_RS01960
AMB_RS01965: AMB_RS01965 - hypothetical protein, at 416,203 to 417,072
_RS01965
Position (kb) 412
413
414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.623 kb on - strand, within AMB_RS01950 at 413.084 kb on + strand, within AMB_RS01955 at 413.084 kb on + strand, within AMB_RS01955 at 413.084 kb on + strand, within AMB_RS01955 at 413.084 kb on + strand, within AMB_RS01955 at 413.084 kb on + strand, within AMB_RS01955 at 413.084 kb on + strand, within AMB_RS01955 at 413.084 kb on + strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.085 kb on - strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.090 kb on + strand, within AMB_RS01955 at 413.091 kb on - strand, within AMB_RS01955 at 413.142 kb on - strand, within AMB_RS01955 at 413.142 kb on - strand, within AMB_RS01955 at 413.545 kb on + strand, within AMB_RS01955 at 413.545 kb on + strand, within AMB_RS01955 at 413.545 kb on + strand, within AMB_RS01955 at 413.702 kb on - strand, within AMB_RS01955 at 413.702 kb on - strand, within AMB_RS01955 at 413.897 kb on + strand, within AMB_RS01955 at 413.897 kb on + strand, within AMB_RS01955 at 413.897 kb on + strand, within AMB_RS01955 at 413.897 kb on + strand, within AMB_RS01955 at 413.897 kb on + strand, within AMB_RS01955 at 413.898 kb on - strand, within AMB_RS01955 at 413.898 kb on - strand, within AMB_RS01955 at 413.898 kb on - strand, within AMB_RS01955 at 413.899 kb on + strand, within AMB_RS01955 at 414.284 kb on - strand, within AMB_RS01955 at 414.521 kb on + strand, within AMB_RS01955 at 414.522 kb on - strand, within AMB_RS01955 at 414.522 kb on - strand, within AMB_RS01955 at 414.522 kb on - strand, within AMB_RS01955 at 414.603 kb on + strand, within AMB_RS01955 at 414.604 kb on - strand, within AMB_RS01955 at 414.604 kb on - strand, within AMB_RS01955 at 414.604 kb on - strand, within AMB_RS01955 at 414.604 kb on - strand, within AMB_RS01955 at 414.753 kb on - strand, within AMB_RS01955 at 414.797 kb on + strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.879 kb on - strand, within AMB_RS01955 at 414.965 kb on + strand, within AMB_RS01955 at 415.098 kb on + strand, within AMB_RS01955 at 415.171 kb on + strand, within AMB_RS01955 at 415.331 kb on + strand, within AMB_RS01955 at 415.331 kb on + strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.332 kb on - strand, within AMB_RS01955 at 415.447 kb on + strand at 415.694 kb on + strand at 415.745 kb on - strand at 415.745 kb on - strand at 415.753 kb on + strand, within AMB_RS01960 at 416.008 kb on + strand, within AMB_RS01960 at 416.008 kb on + strand, within AMB_RS01960 at 416.009 kb on - strand, within AMB_RS01960 at 416.155 kb on - strand at 416.155 kb on - strand at 416.155 kb on - strand at 416.155 kb on - strand at 416.350 kb on - strand, within AMB_RS01965 at 416.478 kb on + strand, within AMB_RS01965 at 416.479 kb on - strand, within AMB_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction 30_mag_3 remove 412,623 - AMB_RS01950 0.54 +0.4 413,084 + AMB_RS01955 0.12 -0.9 413,084 + AMB_RS01955 0.12 -0.2 413,084 + AMB_RS01955 0.12 -0.3 413,084 + AMB_RS01955 0.12 -0.5 413,084 + AMB_RS01955 0.12 -0.4 413,084 + AMB_RS01955 0.12 -0.1 413,084 + AMB_RS01955 0.12 -0.3 413,085 - AMB_RS01955 0.12 -1.2 413,085 - AMB_RS01955 0.12 +0.7 413,085 - AMB_RS01955 0.12 -0.8 413,085 - AMB_RS01955 0.12 -0.3 413,085 - AMB_RS01955 0.12 -1.1 413,085 - AMB_RS01955 0.12 -0.4 413,085 - AMB_RS01955 0.12 -0.5 413,085 - AMB_RS01955 0.12 -0.0 413,090 + AMB_RS01955 0.13 -0.8 413,090 + AMB_RS01955 0.13 -0.6 413,090 + AMB_RS01955 0.13 -0.6 413,090 + AMB_RS01955 0.13 +0.7 413,090 + AMB_RS01955 0.13 +1.3 413,090 + AMB_RS01955 0.13 -0.2 413,090 + AMB_RS01955 0.13 +1.0 413,091 - AMB_RS01955 0.13 +1.3 413,142 - AMB_RS01955 0.14 +0.5 413,142 - AMB_RS01955 0.14 -0.2 413,545 + AMB_RS01955 0.28 +0.8 413,545 + AMB_RS01955 0.28 +0.0 413,545 + AMB_RS01955 0.28 +0.1 413,702 - AMB_RS01955 0.33 -0.0 413,702 - AMB_RS01955 0.33 -1.3 413,897 + AMB_RS01955 0.40 -0.2 413,897 + AMB_RS01955 0.40 +0.9 413,897 + AMB_RS01955 0.40 +0.4 413,897 + AMB_RS01955 0.40 +0.2 413,897 + AMB_RS01955 0.40 -0.3 413,898 - AMB_RS01955 0.40 -0.1 413,898 - AMB_RS01955 0.40 -0.3 413,898 - AMB_RS01955 0.40 -0.2 413,899 + AMB_RS01955 0.40 -1.6 414,284 - AMB_RS01955 0.53 +0.3 414,521 + AMB_RS01955 0.60 +0.6 414,522 - AMB_RS01955 0.61 +0.3 414,522 - AMB_RS01955 0.61 -0.1 414,522 - AMB_RS01955 0.61 -0.2 414,603 + AMB_RS01955 0.63 -1.4 414,604 - AMB_RS01955 0.63 +0.8 414,604 - AMB_RS01955 0.63 +1.3 414,604 - AMB_RS01955 0.63 +0.6 414,604 - AMB_RS01955 0.63 +0.1 414,753 - AMB_RS01955 0.68 -0.4 414,797 + AMB_RS01955 0.70 +0.9 414,879 - AMB_RS01955 0.72 -0.0 414,879 - AMB_RS01955 0.72 -0.4 414,879 - AMB_RS01955 0.72 -1.0 414,879 - AMB_RS01955 0.72 -0.9 414,879 - AMB_RS01955 0.72 -0.5 414,965 + AMB_RS01955 0.75 +0.0 415,098 + AMB_RS01955 0.80 -0.5 415,171 + AMB_RS01955 0.82 -0.6 415,331 + AMB_RS01955 0.88 -2.1 415,331 + AMB_RS01955 0.88 +0.1 415,332 - AMB_RS01955 0.88 +0.1 415,332 - AMB_RS01955 0.88 -1.0 415,332 - AMB_RS01955 0.88 -0.2 415,332 - AMB_RS01955 0.88 -1.9 415,332 - AMB_RS01955 0.88 -1.2 415,332 - AMB_RS01955 0.88 -0.3 415,332 - AMB_RS01955 0.88 -1.3 415,332 - AMB_RS01955 0.88 +0.5 415,447 + -0.8 415,694 + +0.3 415,745 - -0.4 415,745 - -0.4 415,753 + AMB_RS01960 0.11 -1.1 416,008 + AMB_RS01960 0.62 -0.5 416,008 + AMB_RS01960 0.62 -0.6 416,009 - AMB_RS01960 0.62 +1.3 416,155 - -1.6 416,155 - -0.3 416,155 - +0.3 416,155 - -0.3 416,350 - AMB_RS01965 0.17 +1.9 416,478 + AMB_RS01965 0.32 +0.3 416,479 - AMB_RS01965 0.32 +0.2
Or see this region's nucleotide sequence