Strain Fitness in Rahnella sp. WP5 around EX31_RS01230

Experiment: Ammonium chloride (N); ShewMM media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01220 and EX31_RS01225 are separated by 69 nucleotidesEX31_RS01225 and EX31_RS01230 are separated by 51 nucleotidesEX31_RS01230 and EX31_RS01235 are separated by 44 nucleotidesEX31_RS01235 and EX31_RS01240 are separated by 229 nucleotides EX31_RS01220: EX31_RS01220 - peptide MFS transporter, at 271,213 to 272,766 _RS01220 EX31_RS01225: EX31_RS01225 - glutaredoxin-dependent arsenate reductase, at 272,836 to 273,267 _RS01225 EX31_RS01230: EX31_RS01230 - arsenic transporter, at 273,319 to 274,608 _RS01230 EX31_RS01235: EX31_RS01235 - metalloregulator ArsR/SmtB family transcription factor, at 274,653 to 274,973 _RS01235 EX31_RS01240: EX31_RS01240 - glycoside hydrolase family 10 protein, at 275,203 to 276,588 _RS01240 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 272.423 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.606 kb on + strand, within EX31_RS01220at 272.607 kb on - strand, within EX31_RS01220at 272.607 kb on - strand, within EX31_RS01220at 272.625 kb on + strandat 272.626 kb on - strandat 272.733 kb on + strandat 272.734 kb on - strandat 272.848 kb on + strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.851 kb on - strandat 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.933 kb on - strand, within EX31_RS01225at 272.953 kb on + strand, within EX31_RS01225at 273.071 kb on + strand, within EX31_RS01225at 273.259 kb on - strandat 273.291 kb on + strandat 273.292 kb on - strandat 273.321 kb on - strandat 273.404 kb on + strandat 273.404 kb on + strandat 273.408 kb on - strandat 273.408 kb on - strandat 273.426 kb on + strandat 273.426 kb on + strandat 273.426 kb on + strandat 273.455 kb on - strand, within EX31_RS01230at 273.521 kb on + strand, within EX31_RS01230at 273.522 kb on - strand, within EX31_RS01230at 273.522 kb on - strand, within EX31_RS01230at 273.568 kb on - strand, within EX31_RS01230at 273.598 kb on - strand, within EX31_RS01230at 273.649 kb on - strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.658 kb on + strand, within EX31_RS01230at 273.729 kb on - strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.740 kb on + strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.741 kb on - strand, within EX31_RS01230at 273.801 kb on + strand, within EX31_RS01230at 273.802 kb on - strand, within EX31_RS01230at 273.828 kb on + strand, within EX31_RS01230at 273.828 kb on + strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.829 kb on - strand, within EX31_RS01230at 273.830 kb on + strand, within EX31_RS01230at 273.831 kb on - strand, within EX31_RS01230at 273.831 kb on - strand, within EX31_RS01230at 273.988 kb on - strand, within EX31_RS01230at 273.992 kb on + strand, within EX31_RS01230at 273.992 kb on + strand, within EX31_RS01230at 274.125 kb on + strand, within EX31_RS01230at 274.125 kb on + strand, within EX31_RS01230at 274.199 kb on - strand, within EX31_RS01230at 274.314 kb on + strand, within EX31_RS01230at 274.314 kb on + strand, within EX31_RS01230at 274.324 kb on - strand, within EX31_RS01230at 274.324 kb on - strand, within EX31_RS01230at 274.327 kb on + strand, within EX31_RS01230at 274.328 kb on - strand, within EX31_RS01230at 274.328 kb on - strand, within EX31_RS01230at 274.414 kb on - strand, within EX31_RS01230at 274.454 kb on - strand, within EX31_RS01230at 274.454 kb on - strand, within EX31_RS01230at 274.593 kb on + strandat 274.818 kb on + strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.819 kb on - strand, within EX31_RS01235at 274.875 kb on - strand, within EX31_RS01235at 274.974 kb on - strandat 274.974 kb on - strandat 275.063 kb on + strandat 275.171 kb on - strandat 275.250 kb on + strandat 275.327 kb on + strandat 275.484 kb on + strand, within EX31_RS01240at 275.562 kb on + strand, within EX31_RS01240at 275.562 kb on + strand, within EX31_RS01240at 275.563 kb on - strand, within EX31_RS01240at 275.580 kb on + strand, within EX31_RS01240at 275.597 kb on + strand, within EX31_RS01240at 275.597 kb on + strand, within EX31_RS01240

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N); ShewMM media; shaking
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272,423 + EX31_RS01220 0.78 -0.4
272,606 + EX31_RS01220 0.90 +0.4
272,606 + EX31_RS01220 0.90 +0.3
272,606 + EX31_RS01220 0.90 +0.0
272,606 + EX31_RS01220 0.90 +0.9
272,607 - EX31_RS01220 0.90 -0.2
272,607 - EX31_RS01220 0.90 +0.0
272,625 + +0.8
272,626 - +0.7
272,733 + +1.1
272,734 - -1.5
272,848 + +0.0
272,851 - +0.6
272,851 - +0.8
272,851 - +0.4
272,851 - +1.3
272,933 - EX31_RS01225 0.22 -1.6
272,933 - EX31_RS01225 0.22 +0.4
272,933 - EX31_RS01225 0.22 -0.3
272,933 - EX31_RS01225 0.22 -0.7
272,953 + EX31_RS01225 0.27 -1.3
273,071 + EX31_RS01225 0.54 -0.3
273,259 - -0.3
273,291 + +0.2
273,292 - +1.0
273,321 - -0.5
273,404 + -0.0
273,404 + -1.5
273,408 - +0.0
273,408 - -0.5
273,426 + +0.7
273,426 + -0.6
273,426 + -0.3
273,455 - EX31_RS01230 0.11 -0.1
273,521 + EX31_RS01230 0.16 -0.3
273,522 - EX31_RS01230 0.16 +2.0
273,522 - EX31_RS01230 0.16 +0.0
273,568 - EX31_RS01230 0.19 +2.0
273,598 - EX31_RS01230 0.22 +0.9
273,649 - EX31_RS01230 0.26 +2.6
273,658 + EX31_RS01230 0.26 +0.8
273,658 + EX31_RS01230 0.26 +1.0
273,729 - EX31_RS01230 0.32 -1.0
273,740 + EX31_RS01230 0.33 +0.5
273,740 + EX31_RS01230 0.33 +0.8
273,740 + EX31_RS01230 0.33 +1.7
273,740 + EX31_RS01230 0.33 -0.3
273,741 - EX31_RS01230 0.33 +0.3
273,741 - EX31_RS01230 0.33 -0.4
273,741 - EX31_RS01230 0.33 -0.3
273,741 - EX31_RS01230 0.33 -0.6
273,801 + EX31_RS01230 0.37 +1.0
273,802 - EX31_RS01230 0.37 +0.9
273,828 + EX31_RS01230 0.39 +0.4
273,828 + EX31_RS01230 0.39 +0.6
273,829 - EX31_RS01230 0.40 -1.5
273,829 - EX31_RS01230 0.40 -0.5
273,829 - EX31_RS01230 0.40 -2.0
273,829 - EX31_RS01230 0.40 -0.9
273,830 + EX31_RS01230 0.40 +0.0
273,831 - EX31_RS01230 0.40 +0.3
273,831 - EX31_RS01230 0.40 +1.0
273,988 - EX31_RS01230 0.52 -0.0
273,992 + EX31_RS01230 0.52 +0.2
273,992 + EX31_RS01230 0.52 +0.3
274,125 + EX31_RS01230 0.62 +0.0
274,125 + EX31_RS01230 0.62 +0.3
274,199 - EX31_RS01230 0.68 -1.2
274,314 + EX31_RS01230 0.77 -2.0
274,314 + EX31_RS01230 0.77 -0.6
274,324 - EX31_RS01230 0.78 -0.6
274,324 - EX31_RS01230 0.78 -1.4
274,327 + EX31_RS01230 0.78 +0.0
274,328 - EX31_RS01230 0.78 +1.7
274,328 - EX31_RS01230 0.78 -0.8
274,414 - EX31_RS01230 0.85 -0.8
274,454 - EX31_RS01230 0.88 -0.8
274,454 - EX31_RS01230 0.88 -1.6
274,593 + -1.3
274,818 + EX31_RS01235 0.51 +0.8
274,819 - EX31_RS01235 0.52 -0.6
274,819 - EX31_RS01235 0.52 -0.4
274,819 - EX31_RS01235 0.52 -0.5
274,819 - EX31_RS01235 0.52 +0.5
274,819 - EX31_RS01235 0.52 +2.0
274,875 - EX31_RS01235 0.69 +2.0
274,974 - -0.5
274,974 - -0.1
275,063 + +0.7
275,171 - +1.4
275,250 + -0.5
275,327 + -1.0
275,484 + EX31_RS01240 0.20 -2.2
275,562 + EX31_RS01240 0.26 +0.8
275,562 + EX31_RS01240 0.26 -0.6
275,563 - EX31_RS01240 0.26 +0.3
275,580 + EX31_RS01240 0.27 -0.7
275,597 + EX31_RS01240 0.28 -0.2
275,597 + EX31_RS01240 0.28 -0.8

Or see this region's nucleotide sequence