Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4490

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4488 and EX28DRAFT_4489 overlap by 4 nucleotidesEX28DRAFT_4489 and EX28DRAFT_4490 are separated by 110 nucleotidesEX28DRAFT_4490 and EX28DRAFT_4491 are separated by 31 nucleotidesEX28DRAFT_4491 and EX28DRAFT_4492 are separated by 82 nucleotides EX28DRAFT_4488: EX28DRAFT_4488 - The Resistance to Homoserine/Threonine (RhtB) Family protein, at 54,663 to 55,283 _4488 EX28DRAFT_4489: EX28DRAFT_4489 - The Resistance to Homoserine/Threonine (RhtB) Family protein, at 55,280 to 55,900 _4489 EX28DRAFT_4490: EX28DRAFT_4490 - Lysophospholipase, at 56,011 to 57,003 _4490 EX28DRAFT_4491: EX28DRAFT_4491 - HAD-superfamily hydrolase, subfamily IIB, at 57,035 to 57,835 _4491 EX28DRAFT_4492: EX28DRAFT_4492 - Carboxylate/Amino Acid/Amine Transporter, at 57,918 to 58,817 _4492 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.053 kb on + strand, within EX28DRAFT_4488at 55.054 kb on - strand, within EX28DRAFT_4488at 55.155 kb on - strand, within EX28DRAFT_4488at 55.321 kb on + strandat 55.363 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.461 kb on + strand, within EX28DRAFT_4489at 55.462 kb on - strand, within EX28DRAFT_4489at 55.462 kb on - strand, within EX28DRAFT_4489at 55.600 kb on + strand, within EX28DRAFT_4489at 55.600 kb on + strand, within EX28DRAFT_4489at 55.676 kb on - strand, within EX28DRAFT_4489at 55.676 kb on - strand, within EX28DRAFT_4489at 55.741 kb on + strand, within EX28DRAFT_4489at 55.741 kb on + strand, within EX28DRAFT_4489at 55.741 kb on + strand, within EX28DRAFT_4489at 55.742 kb on - strand, within EX28DRAFT_4489at 55.742 kb on - strand, within EX28DRAFT_4489at 55.742 kb on - strand, within EX28DRAFT_4489at 55.825 kb on + strand, within EX28DRAFT_4489at 55.825 kb on + strand, within EX28DRAFT_4489at 55.826 kb on - strand, within EX28DRAFT_4489at 55.826 kb on - strand, within EX28DRAFT_4489at 55.826 kb on - strand, within EX28DRAFT_4489at 55.829 kb on - strand, within EX28DRAFT_4489at 55.875 kb on + strandat 55.936 kb on + strandat 55.944 kb on + strandat 55.944 kb on + strandat 55.945 kb on - strandat 55.993 kb on + strandat 56.067 kb on + strandat 56.068 kb on - strandat 56.210 kb on - strand, within EX28DRAFT_4490at 56.214 kb on + strand, within EX28DRAFT_4490at 56.215 kb on - strand, within EX28DRAFT_4490at 56.301 kb on + strand, within EX28DRAFT_4490at 56.302 kb on - strand, within EX28DRAFT_4490at 56.348 kb on - strand, within EX28DRAFT_4490at 56.412 kb on + strand, within EX28DRAFT_4490at 56.413 kb on - strand, within EX28DRAFT_4490at 56.413 kb on - strand, within EX28DRAFT_4490at 56.506 kb on + strand, within EX28DRAFT_4490at 56.506 kb on + strand, within EX28DRAFT_4490at 56.683 kb on + strand, within EX28DRAFT_4490at 56.949 kb on + strandat 56.997 kb on + strandat 56.997 kb on + strandat 56.997 kb on + strandat 57.034 kb on + strandat 57.038 kb on + strandat 57.039 kb on - strandat 57.117 kb on + strand, within EX28DRAFT_4491at 57.216 kb on - strand, within EX28DRAFT_4491at 57.216 kb on - strand, within EX28DRAFT_4491at 57.323 kb on - strand, within EX28DRAFT_4491at 57.370 kb on + strand, within EX28DRAFT_4491at 57.371 kb on - strand, within EX28DRAFT_4491at 57.421 kb on + strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.422 kb on - strand, within EX28DRAFT_4491at 57.426 kb on - strand, within EX28DRAFT_4491at 57.784 kb on + strandat 57.809 kb on + strandat 57.809 kb on + strandat 57.809 kb on + strandat 57.817 kb on + strandat 57.834 kb on - strandat 57.834 kb on - strandat 57.882 kb on + strandat 57.925 kb on + strandat 57.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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55,053 + EX28DRAFT_4488 0.63 +0.6
55,053 + EX28DRAFT_4488 0.63 -0.4
55,053 + EX28DRAFT_4488 0.63 +0.3
55,053 + EX28DRAFT_4488 0.63 -0.2
55,054 - EX28DRAFT_4488 0.63 +0.5
55,155 - EX28DRAFT_4488 0.79 +0.1
55,321 + +0.1
55,363 + EX28DRAFT_4489 0.13 -0.4
55,461 + EX28DRAFT_4489 0.29 +0.2
55,461 + EX28DRAFT_4489 0.29 +0.5
55,461 + EX28DRAFT_4489 0.29 -0.0
55,462 - EX28DRAFT_4489 0.29 -0.8
55,462 - EX28DRAFT_4489 0.29 -0.3
55,600 + EX28DRAFT_4489 0.52 -0.9
55,600 + EX28DRAFT_4489 0.52 +0.7
55,676 - EX28DRAFT_4489 0.64 +0.6
55,676 - EX28DRAFT_4489 0.64 +0.2
55,741 + EX28DRAFT_4489 0.74 +0.3
55,741 + EX28DRAFT_4489 0.74 +0.2
55,741 + EX28DRAFT_4489 0.74 -1.1
55,742 - EX28DRAFT_4489 0.74 -0.6
55,742 - EX28DRAFT_4489 0.74 -0.0
55,742 - EX28DRAFT_4489 0.74 -0.1
55,825 + EX28DRAFT_4489 0.88 +0.1
55,825 + EX28DRAFT_4489 0.88 +0.1
55,826 - EX28DRAFT_4489 0.88 +0.4
55,826 - EX28DRAFT_4489 0.88 +1.5
55,826 - EX28DRAFT_4489 0.88 +0.8
55,829 - EX28DRAFT_4489 0.88 -0.3
55,875 + +0.7
55,936 + -1.3
55,944 + +0.9
55,944 + -1.2
55,945 - -1.6
55,993 + -1.0
56,067 + +1.3
56,068 - +0.6
56,210 - EX28DRAFT_4490 0.20 +0.2
56,214 + EX28DRAFT_4490 0.20 +0.5
56,215 - EX28DRAFT_4490 0.21 +1.5
56,301 + EX28DRAFT_4490 0.29 -2.7
56,302 - EX28DRAFT_4490 0.29 +0.5
56,348 - EX28DRAFT_4490 0.34 +1.0
56,412 + EX28DRAFT_4490 0.40 +0.3
56,413 - EX28DRAFT_4490 0.40 +0.8
56,413 - EX28DRAFT_4490 0.40 +1.1
56,506 + EX28DRAFT_4490 0.50 +0.1
56,506 + EX28DRAFT_4490 0.50 -0.5
56,683 + EX28DRAFT_4490 0.68 +0.1
56,949 + +0.2
56,997 + -0.1
56,997 + +0.1
56,997 + +1.0
57,034 + +0.7
57,038 + +1.9
57,039 - +0.8
57,117 + EX28DRAFT_4491 0.10 +0.0
57,216 - EX28DRAFT_4491 0.23 +0.3
57,216 - EX28DRAFT_4491 0.23 +0.3
57,323 - EX28DRAFT_4491 0.36 +0.7
57,370 + EX28DRAFT_4491 0.42 -2.3
57,371 - EX28DRAFT_4491 0.42 -0.8
57,421 + EX28DRAFT_4491 0.48 -0.0
57,422 - EX28DRAFT_4491 0.48 +0.7
57,422 - EX28DRAFT_4491 0.48 -2.3
57,422 - EX28DRAFT_4491 0.48 +0.2
57,422 - EX28DRAFT_4491 0.48 +0.2
57,422 - EX28DRAFT_4491 0.48 +0.3
57,422 - EX28DRAFT_4491 0.48 -1.3
57,422 - EX28DRAFT_4491 0.48 -0.0
57,426 - EX28DRAFT_4491 0.49 +0.2
57,784 + +1.3
57,809 + -0.7
57,809 + +0.6
57,809 + +0.3
57,817 + +0.2
57,834 - +0.2
57,834 - +0.8
57,882 + +0.7
57,925 + -0.3
57,941 + +0.2

Or see this region's nucleotide sequence