Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3281 and EX28DRAFT_3282 are separated by 189 nucleotides EX28DRAFT_3282 and EX28DRAFT_3283 are separated by 171 nucleotides EX28DRAFT_3283 and EX28DRAFT_3284 are separated by 91 nucleotides
EX28DRAFT_3281: EX28DRAFT_3281 - Predicted ATPase, at 578,312 to 579,436
_3281
EX28DRAFT_3282: EX28DRAFT_3282 - Uncharacterized protein conserved in bacteria, at 579,626 to 580,024
_3282
EX28DRAFT_3283: EX28DRAFT_3283 - periplasmic serine protease, Do/DeqQ family, at 580,196 to 581,563
_3283
EX28DRAFT_3284: EX28DRAFT_3284 - periplasmic serine pepetdase DegS, at 581,655 to 582,722
_3284
Position (kb) 580
581
582 Strain fitness (log2 ratio) -2
-1
0
1
2 at 579.211 kb on + strand, within EX28DRAFT_3281 at 579.211 kb on + strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.212 kb on - strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.213 kb on + strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.214 kb on - strand, within EX28DRAFT_3281 at 579.442 kb on + strand at 579.448 kb on + strand at 579.449 kb on - strand at 579.449 kb on - strand at 579.503 kb on + strand at 579.504 kb on - strand at 579.518 kb on + strand at 579.546 kb on - strand at 579.555 kb on - strand at 579.555 kb on - strand at 579.638 kb on + strand at 579.638 kb on + strand at 579.845 kb on + strand, within EX28DRAFT_3282 at 579.854 kb on - strand, within EX28DRAFT_3282 at 580.098 kb on - strand at 580.105 kb on + strand at 580.106 kb on - strand at 580.106 kb on - strand at 580.135 kb on + strand at 580.170 kb on - strand at 580.170 kb on - strand at 580.234 kb on - strand at 580.270 kb on - strand at 580.504 kb on + strand, within EX28DRAFT_3283 at 580.802 kb on - strand, within EX28DRAFT_3283 at 581.008 kb on + strand, within EX28DRAFT_3283 at 581.009 kb on - strand, within EX28DRAFT_3283 at 581.058 kb on + strand, within EX28DRAFT_3283 at 581.232 kb on + strand, within EX28DRAFT_3283 at 581.233 kb on - strand, within EX28DRAFT_3283 at 581.272 kb on + strand, within EX28DRAFT_3283 at 581.372 kb on - strand, within EX28DRAFT_3283 at 581.467 kb on + strand at 581.468 kb on - strand at 581.546 kb on + strand at 581.546 kb on + strand at 581.547 kb on - strand at 581.547 kb on - strand at 581.547 kb on - strand at 581.547 kb on - strand at 581.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 579,211 + EX28DRAFT_3281 0.80 -0.0 579,211 + EX28DRAFT_3281 0.80 -0.3 579,212 - EX28DRAFT_3281 0.80 -0.1 579,212 - EX28DRAFT_3281 0.80 +0.4 579,212 - EX28DRAFT_3281 0.80 +1.6 579,212 - EX28DRAFT_3281 0.80 -0.7 579,213 + EX28DRAFT_3281 0.80 +1.8 579,213 + EX28DRAFT_3281 0.80 -1.2 579,213 + EX28DRAFT_3281 0.80 -2.2 579,213 + EX28DRAFT_3281 0.80 -1.2 579,213 + EX28DRAFT_3281 0.80 -0.8 579,214 - EX28DRAFT_3281 0.80 -0.5 579,214 - EX28DRAFT_3281 0.80 +1.2 579,214 - EX28DRAFT_3281 0.80 -1.0 579,214 - EX28DRAFT_3281 0.80 +0.2 579,214 - EX28DRAFT_3281 0.80 -0.8 579,442 + +0.9 579,448 + +0.7 579,449 - +0.8 579,449 - -1.5 579,503 + +0.2 579,504 - -0.2 579,518 + -0.5 579,546 - +0.3 579,555 - -0.2 579,555 - -0.7 579,638 + +0.9 579,638 + -0.1 579,845 + EX28DRAFT_3282 0.55 -1.8 579,854 - EX28DRAFT_3282 0.57 +0.2 580,098 - +1.1 580,105 + -0.5 580,106 - +0.8 580,106 - +1.6 580,135 + +0.5 580,170 - +0.9 580,170 - +1.0 580,234 - +0.5 580,270 - +0.5 580,504 + EX28DRAFT_3283 0.23 +1.0 580,802 - EX28DRAFT_3283 0.44 -0.3 581,008 + EX28DRAFT_3283 0.59 +2.0 581,009 - EX28DRAFT_3283 0.59 +2.1 581,058 + EX28DRAFT_3283 0.63 +0.2 581,232 + EX28DRAFT_3283 0.76 +0.0 581,233 - EX28DRAFT_3283 0.76 +0.2 581,272 + EX28DRAFT_3283 0.79 +2.6 581,372 - EX28DRAFT_3283 0.86 +0.2 581,467 + +0.3 581,468 - +1.4 581,546 + +1.2 581,546 + +2.1 581,547 - +0.5 581,547 - +1.0 581,547 - +1.2 581,547 - +1.8 581,616 + +0.2
Or see this region's nucleotide sequence