Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2769

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2768 and EX28DRAFT_2769 are separated by 16 nucleotidesEX28DRAFT_2769 and EX28DRAFT_2770 are separated by 182 nucleotides EX28DRAFT_2768: EX28DRAFT_2768 - efflux pump membrane protein (multidrug resistance protein A), at 75,844 to 77,016 _2768 EX28DRAFT_2769: EX28DRAFT_2769 - drug resistance transporter, EmrB/QacA subfamily, at 77,033 to 78,580 _2769 EX28DRAFT_2770: EX28DRAFT_2770 - 2-isopropylmalate synthase, yeast type, at 78,763 to 80,418 _2770 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2 3at 76.516 kb on + strand, within EX28DRAFT_2768at 76.516 kb on + strand, within EX28DRAFT_2768at 76.517 kb on - strand, within EX28DRAFT_2768at 76.679 kb on - strand, within EX28DRAFT_2768at 76.697 kb on - strand, within EX28DRAFT_2768at 76.863 kb on + strand, within EX28DRAFT_2768at 76.944 kb on + strandat 76.944 kb on + strandat 77.206 kb on + strand, within EX28DRAFT_2769at 77.419 kb on - strand, within EX28DRAFT_2769at 77.507 kb on - strand, within EX28DRAFT_2769at 77.522 kb on - strand, within EX28DRAFT_2769at 77.534 kb on + strand, within EX28DRAFT_2769at 77.535 kb on - strand, within EX28DRAFT_2769at 77.535 kb on - strand, within EX28DRAFT_2769at 77.535 kb on - strand, within EX28DRAFT_2769at 77.589 kb on + strand, within EX28DRAFT_2769at 77.589 kb on + strand, within EX28DRAFT_2769at 77.856 kb on + strand, within EX28DRAFT_2769at 77.870 kb on - strand, within EX28DRAFT_2769at 77.870 kb on - strand, within EX28DRAFT_2769at 77.873 kb on - strand, within EX28DRAFT_2769at 77.882 kb on + strand, within EX28DRAFT_2769at 77.883 kb on - strand, within EX28DRAFT_2769at 77.891 kb on + strand, within EX28DRAFT_2769at 77.892 kb on - strand, within EX28DRAFT_2769at 77.907 kb on + strand, within EX28DRAFT_2769at 77.934 kb on + strand, within EX28DRAFT_2769at 77.935 kb on - strand, within EX28DRAFT_2769at 77.937 kb on - strand, within EX28DRAFT_2769at 77.942 kb on + strand, within EX28DRAFT_2769at 78.028 kb on + strand, within EX28DRAFT_2769at 78.028 kb on + strand, within EX28DRAFT_2769at 78.064 kb on + strand, within EX28DRAFT_2769at 78.065 kb on - strand, within EX28DRAFT_2769at 78.071 kb on + strand, within EX28DRAFT_2769at 78.071 kb on + strand, within EX28DRAFT_2769at 78.087 kb on - strand, within EX28DRAFT_2769at 78.097 kb on + strand, within EX28DRAFT_2769at 78.098 kb on + strand, within EX28DRAFT_2769at 78.101 kb on - strand, within EX28DRAFT_2769at 78.101 kb on - strand, within EX28DRAFT_2769at 78.178 kb on + strand, within EX28DRAFT_2769at 78.280 kb on + strand, within EX28DRAFT_2769at 78.281 kb on - strand, within EX28DRAFT_2769at 78.380 kb on + strand, within EX28DRAFT_2769at 78.380 kb on + strand, within EX28DRAFT_2769at 78.381 kb on - strand, within EX28DRAFT_2769at 78.464 kb on - strandat 78.578 kb on + strandat 78.578 kb on + strandat 78.787 kb on + strandat 78.787 kb on + strandat 78.788 kb on - strandat 78.788 kb on - strandat 78.788 kb on - strandat 78.788 kb on - strandat 78.788 kb on - strandat 78.797 kb on - strandat 79.089 kb on + strand, within EX28DRAFT_2770at 79.144 kb on + strand, within EX28DRAFT_2770at 79.144 kb on + strand, within EX28DRAFT_2770at 79.145 kb on - strand, within EX28DRAFT_2770at 79.145 kb on - strand, within EX28DRAFT_2770at 79.145 kb on - strand, within EX28DRAFT_2770at 79.179 kb on - strand, within EX28DRAFT_2770at 79.276 kb on + strand, within EX28DRAFT_2770at 79.283 kb on - strand, within EX28DRAFT_2770at 79.392 kb on - strand, within EX28DRAFT_2770at 79.426 kb on + strand, within EX28DRAFT_2770at 79.444 kb on + strand, within EX28DRAFT_2770

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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76,516 + EX28DRAFT_2768 0.57 +0.0
76,516 + EX28DRAFT_2768 0.57 +0.7
76,517 - EX28DRAFT_2768 0.57 -2.6
76,679 - EX28DRAFT_2768 0.71 +1.3
76,697 - EX28DRAFT_2768 0.73 +0.7
76,863 + EX28DRAFT_2768 0.87 -0.8
76,944 + +1.9
76,944 + +1.0
77,206 + EX28DRAFT_2769 0.11 +0.1
77,419 - EX28DRAFT_2769 0.25 +1.0
77,507 - EX28DRAFT_2769 0.31 +1.9
77,522 - EX28DRAFT_2769 0.32 +1.5
77,534 + EX28DRAFT_2769 0.32 -0.3
77,535 - EX28DRAFT_2769 0.32 +1.3
77,535 - EX28DRAFT_2769 0.32 +1.2
77,535 - EX28DRAFT_2769 0.32 +1.2
77,589 + EX28DRAFT_2769 0.36 +1.0
77,589 + EX28DRAFT_2769 0.36 -0.2
77,856 + EX28DRAFT_2769 0.53 +0.2
77,870 - EX28DRAFT_2769 0.54 +1.1
77,870 - EX28DRAFT_2769 0.54 -0.0
77,873 - EX28DRAFT_2769 0.54 +1.5
77,882 + EX28DRAFT_2769 0.55 +0.1
77,883 - EX28DRAFT_2769 0.55 +0.9
77,891 + EX28DRAFT_2769 0.55 +0.9
77,892 - EX28DRAFT_2769 0.55 +0.4
77,907 + EX28DRAFT_2769 0.56 -0.4
77,934 + EX28DRAFT_2769 0.58 -0.1
77,935 - EX28DRAFT_2769 0.58 +1.3
77,937 - EX28DRAFT_2769 0.58 +2.8
77,942 + EX28DRAFT_2769 0.59 +0.2
78,028 + EX28DRAFT_2769 0.64 -1.6
78,028 + EX28DRAFT_2769 0.64 +0.4
78,064 + EX28DRAFT_2769 0.67 -0.1
78,065 - EX28DRAFT_2769 0.67 +0.6
78,071 + EX28DRAFT_2769 0.67 -0.2
78,071 + EX28DRAFT_2769 0.67 +0.4
78,087 - EX28DRAFT_2769 0.68 +1.2
78,097 + EX28DRAFT_2769 0.69 +0.1
78,098 + EX28DRAFT_2769 0.69 +3.7
78,101 - EX28DRAFT_2769 0.69 +1.1
78,101 - EX28DRAFT_2769 0.69 +1.0
78,178 + EX28DRAFT_2769 0.74 +0.2
78,280 + EX28DRAFT_2769 0.81 +0.7
78,281 - EX28DRAFT_2769 0.81 -2.4
78,380 + EX28DRAFT_2769 0.87 +1.4
78,380 + EX28DRAFT_2769 0.87 +0.8
78,381 - EX28DRAFT_2769 0.87 -0.1
78,464 - -1.6
78,578 + +0.5
78,578 + +1.2
78,787 + +0.6
78,787 + -0.6
78,788 - -1.9
78,788 - +0.8
78,788 - +0.3
78,788 - -0.7
78,788 - +1.3
78,797 - +0.9
79,089 + EX28DRAFT_2770 0.20 +1.0
79,144 + EX28DRAFT_2770 0.23 -0.7
79,144 + EX28DRAFT_2770 0.23 -0.3
79,145 - EX28DRAFT_2770 0.23 +1.0
79,145 - EX28DRAFT_2770 0.23 +0.2
79,145 - EX28DRAFT_2770 0.23 +0.9
79,179 - EX28DRAFT_2770 0.25 +1.1
79,276 + EX28DRAFT_2770 0.31 +1.3
79,283 - EX28DRAFT_2770 0.31 +0.2
79,392 - EX28DRAFT_2770 0.38 +0.2
79,426 + EX28DRAFT_2770 0.40 -0.6
79,444 + EX28DRAFT_2770 0.41 -2.6

Or see this region's nucleotide sequence