Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2602 and EX28DRAFT_2603 are separated by 69 nucleotides EX28DRAFT_2603 and EX28DRAFT_2604 overlap by 4 nucleotides EX28DRAFT_2604 and EX28DRAFT_2605 overlap by 4 nucleotides EX28DRAFT_2605 and EX28DRAFT_2606 are separated by 10 nucleotides
EX28DRAFT_2602: EX28DRAFT_2602 - Putative hemolysin, at 2,637,985 to 2,639,709
_2602
EX28DRAFT_2603: EX28DRAFT_2603 - Probable taurine catabolism dioxygenase, at 2,639,779 to 2,640,630
_2603
EX28DRAFT_2604: EX28DRAFT_2604 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,640,627 to 2,641,454
_2604
EX28DRAFT_2605: EX28DRAFT_2605 - ABC-type taurine transport system, ATPase component, at 2,641,451 to 2,642,218
_2605
EX28DRAFT_2606: EX28DRAFT_2606 - taurine ABC transporter, periplasmic binding protein, at 2,642,229 to 2,643,191
_2606
Position (kb)
2640
2641
2642 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2639.667 kb on + strand at 2639.667 kb on + strand at 2639.681 kb on + strand at 2639.682 kb on - strand at 2639.849 kb on + strand at 2639.864 kb on + strand at 2640.146 kb on + strand, within EX28DRAFT_2603 at 2640.227 kb on + strand, within EX28DRAFT_2603 at 2640.325 kb on + strand, within EX28DRAFT_2603 at 2640.525 kb on - strand, within EX28DRAFT_2603 at 2640.525 kb on - strand, within EX28DRAFT_2603 at 2640.525 kb on - strand, within EX28DRAFT_2603 at 2640.592 kb on - strand at 2640.593 kb on + strand at 2640.593 kb on + strand at 2640.634 kb on - strand at 2640.634 kb on - strand at 2641.007 kb on - strand, within EX28DRAFT_2604 at 2641.134 kb on - strand, within EX28DRAFT_2604 at 2641.215 kb on + strand, within EX28DRAFT_2604 at 2641.215 kb on + strand, within EX28DRAFT_2604 at 2641.215 kb on + strand, within EX28DRAFT_2604 at 2641.216 kb on - strand, within EX28DRAFT_2604 at 2641.216 kb on - strand, within EX28DRAFT_2604 at 2641.265 kb on + strand, within EX28DRAFT_2604 at 2641.495 kb on - strand at 2641.808 kb on + strand, within EX28DRAFT_2605 at 2641.809 kb on - strand, within EX28DRAFT_2605 at 2641.844 kb on - strand, within EX28DRAFT_2605 at 2642.180 kb on - strand at 2642.187 kb on + strand at 2642.187 kb on + strand at 2642.196 kb on + strand at 2642.207 kb on - strand at 2642.210 kb on - strand at 2642.230 kb on + strand at 2642.230 kb on + strand at 2642.255 kb on - strand at 2642.377 kb on + strand, within EX28DRAFT_2606 at 2642.377 kb on + strand, within EX28DRAFT_2606 at 2642.378 kb on - strand, within EX28DRAFT_2606
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 2,639,667 + -1.7 2,639,667 + -0.5 2,639,681 + -0.5 2,639,682 - +1.9 2,639,849 + -1.8 2,639,864 + -0.5 2,640,146 + EX28DRAFT_2603 0.43 -0.4 2,640,227 + EX28DRAFT_2603 0.53 +0.4 2,640,325 + EX28DRAFT_2603 0.64 +0.5 2,640,525 - EX28DRAFT_2603 0.88 +0.1 2,640,525 - EX28DRAFT_2603 0.88 +0.1 2,640,525 - EX28DRAFT_2603 0.88 -0.5 2,640,592 - +0.2 2,640,593 + +0.9 2,640,593 + -1.0 2,640,634 - +0.3 2,640,634 - -4.3 2,641,007 - EX28DRAFT_2604 0.46 +0.3 2,641,134 - EX28DRAFT_2604 0.61 +2.9 2,641,215 + EX28DRAFT_2604 0.71 +0.7 2,641,215 + EX28DRAFT_2604 0.71 +0.6 2,641,215 + EX28DRAFT_2604 0.71 +0.1 2,641,216 - EX28DRAFT_2604 0.71 +0.3 2,641,216 - EX28DRAFT_2604 0.71 +1.4 2,641,265 + EX28DRAFT_2604 0.77 +0.1 2,641,495 - +0.2 2,641,808 + EX28DRAFT_2605 0.46 +0.4 2,641,809 - EX28DRAFT_2605 0.47 -0.1 2,641,844 - EX28DRAFT_2605 0.51 -0.8 2,642,180 - +0.2 2,642,187 + +0.5 2,642,187 + +0.5 2,642,196 + -0.0 2,642,207 - -0.1 2,642,210 - +0.1 2,642,230 + +0.4 2,642,230 + +0.3 2,642,255 - +0.9 2,642,377 + EX28DRAFT_2606 0.15 -0.5 2,642,377 + EX28DRAFT_2606 0.15 +0.2 2,642,378 - EX28DRAFT_2606 0.15 +2.1
Or see this region's nucleotide sequence