Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2604

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2602 and EX28DRAFT_2603 are separated by 69 nucleotidesEX28DRAFT_2603 and EX28DRAFT_2604 overlap by 4 nucleotidesEX28DRAFT_2604 and EX28DRAFT_2605 overlap by 4 nucleotidesEX28DRAFT_2605 and EX28DRAFT_2606 are separated by 10 nucleotides EX28DRAFT_2602: EX28DRAFT_2602 - Putative hemolysin, at 2,637,985 to 2,639,709 _2602 EX28DRAFT_2603: EX28DRAFT_2603 - Probable taurine catabolism dioxygenase, at 2,639,779 to 2,640,630 _2603 EX28DRAFT_2604: EX28DRAFT_2604 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,640,627 to 2,641,454 _2604 EX28DRAFT_2605: EX28DRAFT_2605 - ABC-type taurine transport system, ATPase component, at 2,641,451 to 2,642,218 _2605 EX28DRAFT_2606: EX28DRAFT_2606 - taurine ABC transporter, periplasmic binding protein, at 2,642,229 to 2,643,191 _2606 Position (kb) 2640 2641 2642Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2639.667 kb on + strandat 2639.667 kb on + strandat 2639.681 kb on + strandat 2639.682 kb on - strandat 2639.849 kb on + strandat 2639.864 kb on + strandat 2640.146 kb on + strand, within EX28DRAFT_2603at 2640.227 kb on + strand, within EX28DRAFT_2603at 2640.325 kb on + strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.525 kb on - strand, within EX28DRAFT_2603at 2640.592 kb on - strandat 2640.593 kb on + strandat 2640.593 kb on + strandat 2640.634 kb on - strandat 2640.634 kb on - strandat 2641.007 kb on - strand, within EX28DRAFT_2604at 2641.134 kb on - strand, within EX28DRAFT_2604at 2641.215 kb on + strand, within EX28DRAFT_2604at 2641.215 kb on + strand, within EX28DRAFT_2604at 2641.215 kb on + strand, within EX28DRAFT_2604at 2641.216 kb on - strand, within EX28DRAFT_2604at 2641.216 kb on - strand, within EX28DRAFT_2604at 2641.265 kb on + strand, within EX28DRAFT_2604at 2641.495 kb on - strandat 2641.808 kb on + strand, within EX28DRAFT_2605at 2641.809 kb on - strand, within EX28DRAFT_2605at 2641.844 kb on - strand, within EX28DRAFT_2605at 2642.180 kb on - strandat 2642.187 kb on + strandat 2642.187 kb on + strandat 2642.196 kb on + strandat 2642.207 kb on - strandat 2642.210 kb on - strandat 2642.230 kb on + strandat 2642.230 kb on + strandat 2642.255 kb on - strandat 2642.377 kb on + strand, within EX28DRAFT_2606at 2642.377 kb on + strand, within EX28DRAFT_2606at 2642.378 kb on - strand, within EX28DRAFT_2606

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
remove
2,639,667 + -1.7
2,639,667 + -0.5
2,639,681 + -0.5
2,639,682 - +1.9
2,639,849 + -1.8
2,639,864 + -0.5
2,640,146 + EX28DRAFT_2603 0.43 -0.4
2,640,227 + EX28DRAFT_2603 0.53 +0.4
2,640,325 + EX28DRAFT_2603 0.64 +0.5
2,640,525 - EX28DRAFT_2603 0.88 +0.1
2,640,525 - EX28DRAFT_2603 0.88 +0.1
2,640,525 - EX28DRAFT_2603 0.88 -0.5
2,640,592 - +0.2
2,640,593 + +0.9
2,640,593 + -1.0
2,640,634 - +0.3
2,640,634 - -4.3
2,641,007 - EX28DRAFT_2604 0.46 +0.3
2,641,134 - EX28DRAFT_2604 0.61 +2.9
2,641,215 + EX28DRAFT_2604 0.71 +0.7
2,641,215 + EX28DRAFT_2604 0.71 +0.6
2,641,215 + EX28DRAFT_2604 0.71 +0.1
2,641,216 - EX28DRAFT_2604 0.71 +0.3
2,641,216 - EX28DRAFT_2604 0.71 +1.4
2,641,265 + EX28DRAFT_2604 0.77 +0.1
2,641,495 - +0.2
2,641,808 + EX28DRAFT_2605 0.46 +0.4
2,641,809 - EX28DRAFT_2605 0.47 -0.1
2,641,844 - EX28DRAFT_2605 0.51 -0.8
2,642,180 - +0.2
2,642,187 + +0.5
2,642,187 + +0.5
2,642,196 + -0.0
2,642,207 - -0.1
2,642,210 - +0.1
2,642,230 + +0.4
2,642,230 + +0.3
2,642,255 - +0.9
2,642,377 + EX28DRAFT_2606 0.15 -0.5
2,642,377 + EX28DRAFT_2606 0.15 +0.2
2,642,378 - EX28DRAFT_2606 0.15 +2.1

Or see this region's nucleotide sequence