Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2086

Experiment: M9 with sucrose and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2084 and EX28DRAFT_2085 overlap by 4 nucleotidesEX28DRAFT_2085 and EX28DRAFT_2086 are separated by 97 nucleotidesEX28DRAFT_2086 and EX28DRAFT_2087 are separated by 226 nucleotidesEX28DRAFT_2087 and EX28DRAFT_2088 are separated by 19 nucleotides EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853 _2084 EX28DRAFT_2085: EX28DRAFT_2085 - Uncharacterized conserved protein, at 2,110,850 to 2,111,173 _2085 EX28DRAFT_2086: EX28DRAFT_2086 - hypothetical protein, at 2,111,271 to 2,111,789 _2086 EX28DRAFT_2087: EX28DRAFT_2087 - ABC-type arginine transport system, ATPase component, at 2,112,016 to 2,112,744 _2087 EX28DRAFT_2088: EX28DRAFT_2088 - lysine-arginine-ornithine-binding periplasmic protein, at 2,112,764 to 2,113,495 _2088 Position (kb) 2111 2112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2110.334 kb on + strand, within EX28DRAFT_2084at 2110.397 kb on + strand, within EX28DRAFT_2084at 2110.639 kb on + strand, within EX28DRAFT_2084at 2110.702 kb on + strand, within EX28DRAFT_2084at 2110.722 kb on + strand, within EX28DRAFT_2084at 2110.722 kb on + strand, within EX28DRAFT_2084at 2110.723 kb on - strand, within EX28DRAFT_2084at 2111.125 kb on - strand, within EX28DRAFT_2085at 2111.133 kb on - strand, within EX28DRAFT_2085at 2111.234 kb on - strandat 2111.251 kb on + strandat 2111.252 kb on - strandat 2111.258 kb on + strandat 2111.259 kb on - strandat 2111.259 kb on - strandat 2111.418 kb on + strand, within EX28DRAFT_2086at 2111.418 kb on + strand, within EX28DRAFT_2086at 2111.530 kb on + strand, within EX28DRAFT_2086at 2111.531 kb on - strand, within EX28DRAFT_2086at 2111.915 kb on - strandat 2111.936 kb on + strandat 2111.965 kb on - strandat 2111.985 kb on + strandat 2111.986 kb on - strandat 2111.986 kb on - strandat 2111.986 kb on - strandat 2111.986 kb on - strandat 2112.002 kb on + strandat 2112.003 kb on - strandat 2112.025 kb on - strandat 2112.029 kb on + strandat 2112.040 kb on - strandat 2112.040 kb on - strandat 2112.049 kb on + strandat 2112.287 kb on - strand, within EX28DRAFT_2087at 2112.287 kb on - strand, within EX28DRAFT_2087at 2112.416 kb on - strand, within EX28DRAFT_2087at 2112.588 kb on + strand, within EX28DRAFT_2087at 2112.588 kb on + strand, within EX28DRAFT_2087at 2112.589 kb on - strand, within EX28DRAFT_2087at 2112.589 kb on - strand, within EX28DRAFT_2087at 2112.592 kb on - strand, within EX28DRAFT_2087at 2112.652 kb on + strand, within EX28DRAFT_2087at 2112.652 kb on + strand, within EX28DRAFT_2087at 2112.652 kb on + strand, within EX28DRAFT_2087at 2112.653 kb on - strand, within EX28DRAFT_2087at 2112.653 kb on - strand, within EX28DRAFT_2087at 2112.653 kb on - strand, within EX28DRAFT_2087at 2112.653 kb on - strand, within EX28DRAFT_2087at 2112.670 kb on - strand, within EX28DRAFT_2087at 2112.731 kb on - strandat 2112.734 kb on + strandat 2112.735 kb on - strandat 2112.760 kb on + strandat 2112.761 kb on - strandat 2112.761 kb on - strandat 2112.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM
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2,110,334 + EX28DRAFT_2084 0.37 -0.6
2,110,397 + EX28DRAFT_2084 0.45 +1.1
2,110,639 + EX28DRAFT_2084 0.74 +1.7
2,110,702 + EX28DRAFT_2084 0.82 -1.8
2,110,722 + EX28DRAFT_2084 0.84 -0.8
2,110,722 + EX28DRAFT_2084 0.84 -0.7
2,110,723 - EX28DRAFT_2084 0.84 -0.7
2,111,125 - EX28DRAFT_2085 0.85 -0.0
2,111,133 - EX28DRAFT_2085 0.87 +0.9
2,111,234 - +2.2
2,111,251 + -0.2
2,111,252 - -1.1
2,111,258 + +0.7
2,111,259 - +0.0
2,111,259 - +0.3
2,111,418 + EX28DRAFT_2086 0.28 -0.0
2,111,418 + EX28DRAFT_2086 0.28 -0.6
2,111,530 + EX28DRAFT_2086 0.50 +2.3
2,111,531 - EX28DRAFT_2086 0.50 +0.5
2,111,915 - -0.3
2,111,936 + +1.1
2,111,965 - -0.5
2,111,985 + +0.6
2,111,986 - -0.9
2,111,986 - +0.4
2,111,986 - -0.3
2,111,986 - -0.6
2,112,002 + +0.3
2,112,003 - -0.0
2,112,025 - -1.3
2,112,029 + +0.1
2,112,040 - +0.6
2,112,040 - +0.2
2,112,049 + +0.9
2,112,287 - EX28DRAFT_2087 0.37 +1.5
2,112,287 - EX28DRAFT_2087 0.37 -0.1
2,112,416 - EX28DRAFT_2087 0.55 -0.5
2,112,588 + EX28DRAFT_2087 0.78 +0.7
2,112,588 + EX28DRAFT_2087 0.78 -1.9
2,112,589 - EX28DRAFT_2087 0.79 +0.3
2,112,589 - EX28DRAFT_2087 0.79 +1.6
2,112,592 - EX28DRAFT_2087 0.79 -0.3
2,112,652 + EX28DRAFT_2087 0.87 -0.5
2,112,652 + EX28DRAFT_2087 0.87 +0.6
2,112,652 + EX28DRAFT_2087 0.87 +0.8
2,112,653 - EX28DRAFT_2087 0.87 -0.1
2,112,653 - EX28DRAFT_2087 0.87 -0.3
2,112,653 - EX28DRAFT_2087 0.87 -0.3
2,112,653 - EX28DRAFT_2087 0.87 +1.0
2,112,670 - EX28DRAFT_2087 0.90 +0.5
2,112,731 - +0.0
2,112,734 + -2.0
2,112,735 - +0.3
2,112,760 + -0.5
2,112,761 - -0.1
2,112,761 - -3.2
2,112,778 - -1.4

Or see this region's nucleotide sequence