Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1683 and EX28DRAFT_1684 overlap by 4 nucleotides EX28DRAFT_1684 and EX28DRAFT_1685 overlap by 26 nucleotides EX28DRAFT_1685 and EX28DRAFT_1686 are separated by 9 nucleotides
EX28DRAFT_1683: EX28DRAFT_1683 - cysteine desulfurases, SufSfamily, at 1,695,222 to 1,696,442
_1683
EX28DRAFT_1684: EX28DRAFT_1684 - FeS assembly protein SufD, at 1,696,439 to 1,697,710
_1684
EX28DRAFT_1685: EX28DRAFT_1685 - FeS assembly ATPase SufC, at 1,697,685 to 1,698,431
_1685
EX28DRAFT_1686: EX28DRAFT_1686 - FeS assembly protein SufB, at 1,698,441 to 1,699,931
_1686
Position (kb) 1696
1697
1698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1695.542 kb on + strand, within EX28DRAFT_1683 at 1695.542 kb on + strand, within EX28DRAFT_1683 at 1695.543 kb on - strand, within EX28DRAFT_1683 at 1695.565 kb on + strand, within EX28DRAFT_1683 at 1695.565 kb on + strand, within EX28DRAFT_1683 at 1695.565 kb on + strand, within EX28DRAFT_1683 at 1695.566 kb on - strand, within EX28DRAFT_1683 at 1695.566 kb on - strand, within EX28DRAFT_1683 at 1695.666 kb on + strand, within EX28DRAFT_1683 at 1696.136 kb on + strand, within EX28DRAFT_1683 at 1696.142 kb on + strand, within EX28DRAFT_1683 at 1696.143 kb on - strand, within EX28DRAFT_1683 at 1696.265 kb on + strand, within EX28DRAFT_1683 at 1696.272 kb on - strand, within EX28DRAFT_1683 at 1696.303 kb on + strand, within EX28DRAFT_1683 at 1696.366 kb on + strand at 1696.367 kb on - strand at 1696.539 kb on + strand at 1696.539 kb on + strand at 1696.539 kb on + strand at 1696.543 kb on + strand at 1696.544 kb on - strand at 1696.590 kb on + strand, within EX28DRAFT_1684 at 1696.590 kb on + strand, within EX28DRAFT_1684 at 1696.807 kb on + strand, within EX28DRAFT_1684 at 1696.986 kb on + strand, within EX28DRAFT_1684 at 1696.986 kb on + strand, within EX28DRAFT_1684 at 1696.987 kb on - strand, within EX28DRAFT_1684 at 1697.010 kb on - strand, within EX28DRAFT_1684 at 1697.558 kb on - strand, within EX28DRAFT_1684 at 1697.559 kb on + strand, within EX28DRAFT_1684 at 1697.579 kb on - strand, within EX28DRAFT_1684 at 1697.686 kb on + strand at 1697.687 kb on - strand at 1697.687 kb on - strand at 1697.700 kb on - strand at 1697.762 kb on + strand, within EX28DRAFT_1685 at 1697.762 kb on + strand, within EX28DRAFT_1685 at 1697.803 kb on + strand, within EX28DRAFT_1685 at 1697.803 kb on + strand, within EX28DRAFT_1685 at 1697.928 kb on + strand, within EX28DRAFT_1685 at 1697.928 kb on + strand, within EX28DRAFT_1685 at 1697.972 kb on + strand, within EX28DRAFT_1685 at 1698.275 kb on - strand, within EX28DRAFT_1685 at 1698.399 kb on + strand at 1698.427 kb on - strand at 1698.590 kb on - strand, within EX28DRAFT_1686 at 1698.667 kb on + strand, within EX28DRAFT_1686 at 1698.677 kb on + strand, within EX28DRAFT_1686 at 1698.678 kb on - strand, within EX28DRAFT_1686
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 1,695,542 + EX28DRAFT_1683 0.26 -0.4 1,695,542 + EX28DRAFT_1683 0.26 +0.4 1,695,543 - EX28DRAFT_1683 0.26 +1.0 1,695,565 + EX28DRAFT_1683 0.28 +2.0 1,695,565 + EX28DRAFT_1683 0.28 +0.1 1,695,565 + EX28DRAFT_1683 0.28 -0.2 1,695,566 - EX28DRAFT_1683 0.28 +0.2 1,695,566 - EX28DRAFT_1683 0.28 +0.6 1,695,666 + EX28DRAFT_1683 0.36 +0.3 1,696,136 + EX28DRAFT_1683 0.75 +1.1 1,696,142 + EX28DRAFT_1683 0.75 -0.0 1,696,143 - EX28DRAFT_1683 0.75 +0.5 1,696,265 + EX28DRAFT_1683 0.85 -3.2 1,696,272 - EX28DRAFT_1683 0.86 +2.2 1,696,303 + EX28DRAFT_1683 0.89 +1.0 1,696,366 + +1.0 1,696,367 - +0.8 1,696,539 + -0.5 1,696,539 + +0.4 1,696,539 + -2.2 1,696,543 + +0.1 1,696,544 - +1.3 1,696,590 + EX28DRAFT_1684 0.12 -1.8 1,696,590 + EX28DRAFT_1684 0.12 +0.9 1,696,807 + EX28DRAFT_1684 0.29 +1.2 1,696,986 + EX28DRAFT_1684 0.43 -2.0 1,696,986 + EX28DRAFT_1684 0.43 +0.5 1,696,987 - EX28DRAFT_1684 0.43 +1.2 1,697,010 - EX28DRAFT_1684 0.45 -2.2 1,697,558 - EX28DRAFT_1684 0.88 -0.0 1,697,559 + EX28DRAFT_1684 0.88 +1.2 1,697,579 - EX28DRAFT_1684 0.90 +0.4 1,697,686 + +1.8 1,697,687 - -0.9 1,697,687 - -1.0 1,697,700 - -2.0 1,697,762 + EX28DRAFT_1685 0.10 +3.1 1,697,762 + EX28DRAFT_1685 0.10 +1.1 1,697,803 + EX28DRAFT_1685 0.16 +0.7 1,697,803 + EX28DRAFT_1685 0.16 +0.6 1,697,928 + EX28DRAFT_1685 0.33 +0.3 1,697,928 + EX28DRAFT_1685 0.33 -0.2 1,697,972 + EX28DRAFT_1685 0.38 +0.2 1,698,275 - EX28DRAFT_1685 0.79 +0.6 1,698,399 + +1.6 1,698,427 - +1.0 1,698,590 - EX28DRAFT_1686 0.10 +0.3 1,698,667 + EX28DRAFT_1686 0.15 +0.1 1,698,677 + EX28DRAFT_1686 0.16 +2.5 1,698,678 - EX28DRAFT_1686 0.16 +0.7
Or see this region's nucleotide sequence