Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0645 and EX28DRAFT_0646 are separated by 228 nucleotides EX28DRAFT_0646 and EX28DRAFT_0647 are separated by 36 nucleotides EX28DRAFT_0647 and EX28DRAFT_0648 are separated by 202 nucleotides
EX28DRAFT_0645: EX28DRAFT_0645 - aromatic amino acid transport protein, at 639,157 to 640,368
_0645
EX28DRAFT_0646: EX28DRAFT_0646 - hypothetical protein, at 640,597 to 640,938
_0646
EX28DRAFT_0647: EX28DRAFT_0647 - Ferritin-like protein, at 640,975 to 641,472
_0647
EX28DRAFT_0648: EX28DRAFT_0648 - YecR-like lipoprotein, at 641,675 to 642,013
_0648
Position (kb) 640
641 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 639.750 kb on + strand, within EX28DRAFT_0645 at 639.763 kb on - strand, within EX28DRAFT_0645 at 639.862 kb on - strand, within EX28DRAFT_0645 at 639.862 kb on - strand, within EX28DRAFT_0645 at 640.076 kb on + strand, within EX28DRAFT_0645 at 640.094 kb on + strand, within EX28DRAFT_0645 at 640.114 kb on - strand, within EX28DRAFT_0645 at 640.149 kb on - strand, within EX28DRAFT_0645 at 640.149 kb on - strand, within EX28DRAFT_0645 at 640.197 kb on - strand, within EX28DRAFT_0645 at 640.223 kb on + strand, within EX28DRAFT_0645 at 640.470 kb on - strand at 640.514 kb on + strand at 640.515 kb on - strand at 640.830 kb on + strand, within EX28DRAFT_0646 at 640.831 kb on - strand, within EX28DRAFT_0646 at 640.937 kb on - strand at 640.976 kb on + strand at 641.007 kb on + strand at 641.290 kb on - strand, within EX28DRAFT_0647 at 641.375 kb on + strand, within EX28DRAFT_0647 at 641.532 kb on - strand at 641.562 kb on + strand at 641.719 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.725 kb on + strand, within EX28DRAFT_0648 at 641.728 kb on - strand, within EX28DRAFT_0648 at 641.818 kb on - strand, within EX28DRAFT_0648 at 641.858 kb on + strand, within EX28DRAFT_0648 at 641.858 kb on + strand, within EX28DRAFT_0648 at 641.859 kb on - strand, within EX28DRAFT_0648 at 641.859 kb on - strand, within EX28DRAFT_0648 at 641.859 kb on - strand, within EX28DRAFT_0648 at 641.862 kb on + strand, within EX28DRAFT_0648 at 641.862 kb on + strand, within EX28DRAFT_0648 at 641.863 kb on - strand, within EX28DRAFT_0648 at 641.863 kb on - strand, within EX28DRAFT_0648 at 641.863 kb on - strand, within EX28DRAFT_0648 at 641.874 kb on + strand, within EX28DRAFT_0648
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 639,750 + EX28DRAFT_0645 0.49 +0.4 639,763 - EX28DRAFT_0645 0.50 +0.1 639,862 - EX28DRAFT_0645 0.58 +0.4 639,862 - EX28DRAFT_0645 0.58 -0.6 640,076 + EX28DRAFT_0645 0.76 -1.4 640,094 + EX28DRAFT_0645 0.77 -0.3 640,114 - EX28DRAFT_0645 0.79 +0.1 640,149 - EX28DRAFT_0645 0.82 -0.5 640,149 - EX28DRAFT_0645 0.82 -0.4 640,197 - EX28DRAFT_0645 0.86 -0.5 640,223 + EX28DRAFT_0645 0.88 +0.5 640,470 - -0.6 640,514 + -0.7 640,515 - -1.2 640,830 + EX28DRAFT_0646 0.68 +0.3 640,831 - EX28DRAFT_0646 0.68 +3.0 640,937 - +0.2 640,976 + +0.5 641,007 + -0.7 641,290 - EX28DRAFT_0647 0.63 -4.0 641,375 + EX28DRAFT_0647 0.80 +0.9 641,532 - +1.4 641,562 + +0.7 641,719 + EX28DRAFT_0648 0.13 +0.7 641,725 + EX28DRAFT_0648 0.15 +0.0 641,725 + EX28DRAFT_0648 0.15 -0.3 641,725 + EX28DRAFT_0648 0.15 -0.1 641,725 + EX28DRAFT_0648 0.15 -0.7 641,728 - EX28DRAFT_0648 0.16 +0.2 641,818 - EX28DRAFT_0648 0.42 +0.5 641,858 + EX28DRAFT_0648 0.54 -0.3 641,858 + EX28DRAFT_0648 0.54 -0.1 641,859 - EX28DRAFT_0648 0.54 -0.1 641,859 - EX28DRAFT_0648 0.54 -1.9 641,859 - EX28DRAFT_0648 0.54 +0.8 641,862 + EX28DRAFT_0648 0.55 +0.6 641,862 + EX28DRAFT_0648 0.55 +0.8 641,863 - EX28DRAFT_0648 0.55 -2.4 641,863 - EX28DRAFT_0648 0.55 +1.7 641,863 - EX28DRAFT_0648 0.55 -0.9 641,874 + EX28DRAFT_0648 0.59 +0.2
Or see this region's nucleotide sequence