Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS07335

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS07330 and ABIE40_RS07335 are separated by 760 nucleotidesABIE40_RS07335 and ABIE40_RS07340 are separated by 93 nucleotides ABIE40_RS07330: ABIE40_RS07330 - PleD family two-component system response regulator, at 1,437,631 to 1,439,004 _RS07330 ABIE40_RS07335: ABIE40_RS07335 - 50S ribosomal protein L33, at 1,439,765 to 1,439,932 _RS07335 ABIE40_RS07340: ABIE40_RS07340 - MFS transporter, at 1,440,026 to 1,441,210 _RS07340 Position (kb) 1439 1440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1438.773 kb on + strand, within ABIE40_RS07330at 1438.773 kb on + strand, within ABIE40_RS07330at 1438.910 kb on + strandat 1438.910 kb on + strandat 1438.954 kb on + strandat 1438.968 kb on + strandat 1439.032 kb on - strandat 1439.032 kb on - strandat 1439.193 kb on + strandat 1439.282 kb on - strandat 1439.407 kb on + strandat 1439.408 kb on - strandat 1439.408 kb on - strandat 1439.408 kb on - strandat 1439.419 kb on - strandat 1439.419 kb on - strandat 1439.427 kb on + strandat 1439.482 kb on - strandat 1439.515 kb on + strandat 1439.515 kb on + strandat 1439.568 kb on + strandat 1439.568 kb on + strandat 1439.568 kb on + strandat 1439.581 kb on + strandat 1439.582 kb on - strandat 1439.648 kb on + strandat 1439.657 kb on - strandat 1439.704 kb on + strandat 1439.704 kb on + strandat 1439.704 kb on + strandat 1439.705 kb on - strandat 1439.705 kb on - strandat 1439.767 kb on - strandat 1439.818 kb on - strand, within ABIE40_RS07335at 1439.818 kb on - strand, within ABIE40_RS07335at 1439.921 kb on - strandat 1439.921 kb on - strandat 1439.951 kb on - strandat 1439.951 kb on - strandat 1440.057 kb on - strandat 1440.057 kb on - strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.075 kb on + strandat 1440.076 kb on - strandat 1440.076 kb on - strandat 1440.076 kb on - strandat 1440.076 kb on - strandat 1440.076 kb on - strandat 1440.076 kb on - strandat 1440.077 kb on + strandat 1440.115 kb on + strandat 1440.210 kb on - strand, within ABIE40_RS07340at 1440.210 kb on - strand, within ABIE40_RS07340at 1440.257 kb on - strand, within ABIE40_RS07340at 1440.258 kb on + strand, within ABIE40_RS07340at 1440.258 kb on + strand, within ABIE40_RS07340at 1440.259 kb on - strand, within ABIE40_RS07340at 1440.259 kb on - strand, within ABIE40_RS07340at 1440.316 kb on + strand, within ABIE40_RS07340at 1440.316 kb on + strand, within ABIE40_RS07340at 1440.316 kb on + strand, within ABIE40_RS07340at 1440.316 kb on + strand, within ABIE40_RS07340at 1440.316 kb on + strand, within ABIE40_RS07340at 1440.316 kb on + strand, within ABIE40_RS07340at 1440.317 kb on - strand, within ABIE40_RS07340at 1440.317 kb on - strand, within ABIE40_RS07340at 1440.347 kb on + strand, within ABIE40_RS07340at 1440.348 kb on - strand, within ABIE40_RS07340at 1440.348 kb on - strand, within ABIE40_RS07340at 1440.504 kb on + strand, within ABIE40_RS07340at 1440.504 kb on + strand, within ABIE40_RS07340at 1440.505 kb on - strand, within ABIE40_RS07340at 1440.505 kb on - strand, within ABIE40_RS07340at 1440.505 kb on - strand, within ABIE40_RS07340at 1440.505 kb on - strand, within ABIE40_RS07340at 1440.505 kb on - strand, within ABIE40_RS07340at 1440.505 kb on - strand, within ABIE40_RS07340at 1440.588 kb on + strand, within ABIE40_RS07340at 1440.589 kb on - strand, within ABIE40_RS07340at 1440.589 kb on - strand, within ABIE40_RS07340at 1440.731 kb on + strand, within ABIE40_RS07340at 1440.771 kb on + strand, within ABIE40_RS07340at 1440.771 kb on + strand, within ABIE40_RS07340at 1440.772 kb on - strand, within ABIE40_RS07340at 1440.772 kb on - strand, within ABIE40_RS07340at 1440.772 kb on - strand, within ABIE40_RS07340at 1440.775 kb on + strand, within ABIE40_RS07340at 1440.776 kb on - strand, within ABIE40_RS07340at 1440.776 kb on - strand, within ABIE40_RS07340at 1440.817 kb on + strand, within ABIE40_RS07340at 1440.817 kb on + strand, within ABIE40_RS07340at 1440.906 kb on + strand, within ABIE40_RS07340at 1440.906 kb on + strand, within ABIE40_RS07340at 1440.906 kb on + strand, within ABIE40_RS07340at 1440.907 kb on - strand, within ABIE40_RS07340at 1440.907 kb on - strand, within ABIE40_RS07340at 1440.907 kb on - strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.909 kb on + strand, within ABIE40_RS07340at 1440.910 kb on - strand, within ABIE40_RS07340at 1440.910 kb on - strand, within ABIE40_RS07340at 1440.910 kb on - strand, within ABIE40_RS07340at 1440.910 kb on - strand, within ABIE40_RS07340at 1440.910 kb on - strand, within ABIE40_RS07340at 1440.910 kb on - strand, within ABIE40_RS07340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,438,773 + ABIE40_RS07330 0.83 -0.4
1,438,773 + ABIE40_RS07330 0.83 -0.1
1,438,910 + +0.9
1,438,910 + +0.5
1,438,954 + -2.2
1,438,968 + -0.4
1,439,032 - -0.7
1,439,032 - +0.7
1,439,193 + +0.9
1,439,282 - -1.7
1,439,407 + +0.5
1,439,408 - +2.2
1,439,408 - -0.5
1,439,408 - +0.1
1,439,419 - -1.0
1,439,419 - +0.5
1,439,427 + +0.3
1,439,482 - +0.3
1,439,515 + +0.2
1,439,515 + -0.9
1,439,568 + -1.4
1,439,568 + +3.1
1,439,568 + +0.3
1,439,581 + -0.2
1,439,582 - +1.9
1,439,648 + +0.5
1,439,657 - -0.3
1,439,704 + -0.2
1,439,704 + +1.3
1,439,704 + +1.6
1,439,705 - +0.8
1,439,705 - +0.3
1,439,767 - -0.1
1,439,818 - ABIE40_RS07335 0.32 -2.3
1,439,818 - ABIE40_RS07335 0.32 -2.2
1,439,921 - +0.7
1,439,921 - -1.8
1,439,951 - +2.1
1,439,951 - -2.8
1,440,057 - -0.1
1,440,057 - -2.4
1,440,075 + -1.7
1,440,075 + -0.3
1,440,075 + -0.1
1,440,075 + -0.6
1,440,075 + +0.9
1,440,075 + -0.4
1,440,075 + +1.1
1,440,075 + +3.6
1,440,076 - +1.0
1,440,076 - +0.5
1,440,076 - -0.1
1,440,076 - -0.2
1,440,076 - +2.7
1,440,076 - +0.1
1,440,077 + -2.6
1,440,115 + -0.4
1,440,210 - ABIE40_RS07340 0.16 +0.1
1,440,210 - ABIE40_RS07340 0.16 +1.3
1,440,257 - ABIE40_RS07340 0.19 +0.4
1,440,258 + ABIE40_RS07340 0.20 -1.2
1,440,258 + ABIE40_RS07340 0.20 -2.5
1,440,259 - ABIE40_RS07340 0.20 -0.4
1,440,259 - ABIE40_RS07340 0.20 -1.7
1,440,316 + ABIE40_RS07340 0.24 -1.4
1,440,316 + ABIE40_RS07340 0.24 +0.7
1,440,316 + ABIE40_RS07340 0.24 -1.3
1,440,316 + ABIE40_RS07340 0.24 +0.9
1,440,316 + ABIE40_RS07340 0.24 +0.9
1,440,316 + ABIE40_RS07340 0.24 -0.2
1,440,317 - ABIE40_RS07340 0.25 +1.7
1,440,317 - ABIE40_RS07340 0.25 +1.0
1,440,347 + ABIE40_RS07340 0.27 +2.6
1,440,348 - ABIE40_RS07340 0.27 -0.6
1,440,348 - ABIE40_RS07340 0.27 +0.3
1,440,504 + ABIE40_RS07340 0.40 -1.5
1,440,504 + ABIE40_RS07340 0.40 +0.4
1,440,505 - ABIE40_RS07340 0.40 -0.2
1,440,505 - ABIE40_RS07340 0.40 +0.2
1,440,505 - ABIE40_RS07340 0.40 +0.0
1,440,505 - ABIE40_RS07340 0.40 +0.3
1,440,505 - ABIE40_RS07340 0.40 +0.6
1,440,505 - ABIE40_RS07340 0.40 -2.1
1,440,588 + ABIE40_RS07340 0.47 +0.5
1,440,589 - ABIE40_RS07340 0.48 +0.1
1,440,589 - ABIE40_RS07340 0.48 +0.0
1,440,731 + ABIE40_RS07340 0.59 -0.2
1,440,771 + ABIE40_RS07340 0.63 +1.4
1,440,771 + ABIE40_RS07340 0.63 +0.2
1,440,772 - ABIE40_RS07340 0.63 -1.3
1,440,772 - ABIE40_RS07340 0.63 +3.9
1,440,772 - ABIE40_RS07340 0.63 +0.1
1,440,775 + ABIE40_RS07340 0.63 +0.6
1,440,776 - ABIE40_RS07340 0.63 +0.3
1,440,776 - ABIE40_RS07340 0.63 +0.7
1,440,817 + ABIE40_RS07340 0.67 -1.1
1,440,817 + ABIE40_RS07340 0.67 -0.8
1,440,906 + ABIE40_RS07340 0.74 -0.2
1,440,906 + ABIE40_RS07340 0.74 -0.5
1,440,906 + ABIE40_RS07340 0.74 -0.7
1,440,907 - ABIE40_RS07340 0.74 -0.1
1,440,907 - ABIE40_RS07340 0.74 -1.0
1,440,907 - ABIE40_RS07340 0.74 -1.7
1,440,909 + ABIE40_RS07340 0.75 -1.4
1,440,909 + ABIE40_RS07340 0.75 +0.7
1,440,909 + ABIE40_RS07340 0.75 +0.8
1,440,909 + ABIE40_RS07340 0.75 +0.6
1,440,909 + ABIE40_RS07340 0.75 +0.5
1,440,909 + ABIE40_RS07340 0.75 -0.3
1,440,909 + ABIE40_RS07340 0.75 +2.6
1,440,909 + ABIE40_RS07340 0.75 -1.8
1,440,909 + ABIE40_RS07340 0.75 +0.7
1,440,909 + ABIE40_RS07340 0.75 -0.2
1,440,909 + ABIE40_RS07340 0.75 +0.7
1,440,909 + ABIE40_RS07340 0.75 +0.8
1,440,910 - ABIE40_RS07340 0.75 -0.3
1,440,910 - ABIE40_RS07340 0.75 -0.3
1,440,910 - ABIE40_RS07340 0.75 +0.6
1,440,910 - ABIE40_RS07340 0.75 -1.5
1,440,910 - ABIE40_RS07340 0.75 -0.3
1,440,910 - ABIE40_RS07340 0.75 -1.2

Or see this region's nucleotide sequence