Experiment: Glycolic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05035 and ABID97_RS05040 overlap by 8 nucleotides ABID97_RS05040 and ABID97_RS05045 are separated by 27 nucleotides ABID97_RS05045 and ABID97_RS05050 overlap by 25 nucleotides
ABID97_RS05035: ABID97_RS05035 - type VI secretion system accessory protein TagJ, at 1,060,548 to 1,061,390
_RS05035
ABID97_RS05040: ABID97_RS05040 - type VI secretion system baseplate subunit TssE, at 1,061,383 to 1,061,895
_RS05040
ABID97_RS05045: ABID97_RS05045 - type VI secretion system baseplate subunit TssF, at 1,061,923 to 1,063,815
_RS05045
ABID97_RS05050: ABID97_RS05050 - type VI secretion system baseplate subunit TssG, at 1,063,791 to 1,064,870
_RS05050
Position (kb)
1061
1062
1063
1064 Strain fitness (log2 ratio)
-1
0
1 at 1061.037 kb on + strand, within ABID97_RS05035 at 1061.038 kb on - strand, within ABID97_RS05035 at 1061.041 kb on - strand, within ABID97_RS05035 at 1061.041 kb on - strand, within ABID97_RS05035 at 1061.041 kb on - strand, within ABID97_RS05035 at 1061.947 kb on + strand at 1061.947 kb on + strand at 1061.965 kb on + strand at 1062.124 kb on + strand, within ABID97_RS05045 at 1062.364 kb on + strand, within ABID97_RS05045 at 1062.364 kb on + strand, within ABID97_RS05045 at 1062.365 kb on - strand, within ABID97_RS05045 at 1062.718 kb on + strand, within ABID97_RS05045 at 1063.195 kb on + strand, within ABID97_RS05045 at 1063.442 kb on - strand, within ABID97_RS05045 at 1063.873 kb on - strand at 1064.064 kb on + strand, within ABID97_RS05050 at 1064.193 kb on + strand, within ABID97_RS05050 at 1064.193 kb on + strand, within ABID97_RS05050 at 1064.812 kb on + strand at 1064.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycolic Acid (C) remove 1,061,037 + ABID97_RS05035 0.58 -0.1 1,061,038 - ABID97_RS05035 0.58 -0.4 1,061,041 - ABID97_RS05035 0.58 +1.3 1,061,041 - ABID97_RS05035 0.58 +0.5 1,061,041 - ABID97_RS05035 0.58 +1.1 1,061,947 + +1.5 1,061,947 + +0.4 1,061,965 + +0.1 1,062,124 + ABID97_RS05045 0.11 +1.1 1,062,364 + ABID97_RS05045 0.23 -0.4 1,062,364 + ABID97_RS05045 0.23 +0.3 1,062,365 - ABID97_RS05045 0.23 -0.3 1,062,718 + ABID97_RS05045 0.42 +1.2 1,063,195 + ABID97_RS05045 0.67 -0.5 1,063,442 - ABID97_RS05045 0.80 -0.2 1,063,873 - -0.4 1,064,064 + ABID97_RS05050 0.25 +0.3 1,064,193 + ABID97_RS05050 0.37 -0.7 1,064,193 + ABID97_RS05050 0.37 -1.1 1,064,812 + +1.3 1,064,813 - +0.2
Or see this region's nucleotide sequence