Strain Fitness in Variovorax sp. OAS795 around ABID97_RS05045

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS05035 and ABID97_RS05040 overlap by 8 nucleotidesABID97_RS05040 and ABID97_RS05045 are separated by 27 nucleotidesABID97_RS05045 and ABID97_RS05050 overlap by 25 nucleotides ABID97_RS05035: ABID97_RS05035 - type VI secretion system accessory protein TagJ, at 1,060,548 to 1,061,390 _RS05035 ABID97_RS05040: ABID97_RS05040 - type VI secretion system baseplate subunit TssE, at 1,061,383 to 1,061,895 _RS05040 ABID97_RS05045: ABID97_RS05045 - type VI secretion system baseplate subunit TssF, at 1,061,923 to 1,063,815 _RS05045 ABID97_RS05050: ABID97_RS05050 - type VI secretion system baseplate subunit TssG, at 1,063,791 to 1,064,870 _RS05050 Position (kb) 1061 1062 1063 1064Strain fitness (log2 ratio) -1 0 1at 1061.037 kb on + strand, within ABID97_RS05035at 1061.038 kb on - strand, within ABID97_RS05035at 1061.041 kb on - strand, within ABID97_RS05035at 1061.041 kb on - strand, within ABID97_RS05035at 1061.041 kb on - strand, within ABID97_RS05035at 1061.947 kb on + strandat 1061.947 kb on + strandat 1061.965 kb on + strandat 1062.124 kb on + strand, within ABID97_RS05045at 1062.364 kb on + strand, within ABID97_RS05045at 1062.364 kb on + strand, within ABID97_RS05045at 1062.365 kb on - strand, within ABID97_RS05045at 1062.718 kb on + strand, within ABID97_RS05045at 1063.195 kb on + strand, within ABID97_RS05045at 1063.442 kb on - strand, within ABID97_RS05045at 1063.873 kb on - strandat 1064.064 kb on + strand, within ABID97_RS05050at 1064.193 kb on + strand, within ABID97_RS05050at 1064.193 kb on + strand, within ABID97_RS05050at 1064.812 kb on + strandat 1064.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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1,061,037 + ABID97_RS05035 0.58 -0.1
1,061,038 - ABID97_RS05035 0.58 -0.4
1,061,041 - ABID97_RS05035 0.58 +1.3
1,061,041 - ABID97_RS05035 0.58 +0.5
1,061,041 - ABID97_RS05035 0.58 +1.1
1,061,947 + +1.5
1,061,947 + +0.4
1,061,965 + +0.1
1,062,124 + ABID97_RS05045 0.11 +1.1
1,062,364 + ABID97_RS05045 0.23 -0.4
1,062,364 + ABID97_RS05045 0.23 +0.3
1,062,365 - ABID97_RS05045 0.23 -0.3
1,062,718 + ABID97_RS05045 0.42 +1.2
1,063,195 + ABID97_RS05045 0.67 -0.5
1,063,442 - ABID97_RS05045 0.80 -0.2
1,063,873 - -0.4
1,064,064 + ABID97_RS05050 0.25 +0.3
1,064,193 + ABID97_RS05050 0.37 -0.7
1,064,193 + ABID97_RS05050 0.37 -1.1
1,064,812 + +1.3
1,064,813 - +0.2

Or see this region's nucleotide sequence