Experiment: M9 with sucrose and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4122 and EX28DRAFT_4123 are separated by 16 nucleotides EX28DRAFT_4123 and EX28DRAFT_4124 are separated by 62 nucleotides EX28DRAFT_4124 and EX28DRAFT_4125 are separated by 585 nucleotides
EX28DRAFT_4122: EX28DRAFT_4122 - rhomboid family protease GlpG, at 97,701 to 98,531
_4122
EX28DRAFT_4123: EX28DRAFT_4123 - transcriptional regulator, DeoR family, at 98,548 to 99,306
_4123
EX28DRAFT_4124: EX28DRAFT_4124 - ATP-dependent transcriptional regulator, at 99,369 to 102,074
_4124
EX28DRAFT_4125: EX28DRAFT_4125 - glycogen/starch/alpha-glucan phosphorylases, at 102,660 to 105,053
_4125
Position (kb)
99
100
101
102
103 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 98.370 kb on + strand, within EX28DRAFT_4122 at 98.371 kb on - strand, within EX28DRAFT_4122 at 98.387 kb on - strand, within EX28DRAFT_4122 at 98.387 kb on - strand, within EX28DRAFT_4122 at 98.444 kb on + strand, within EX28DRAFT_4122 at 98.529 kb on + strand at 98.529 kb on + strand at 98.602 kb on + strand at 98.836 kb on - strand, within EX28DRAFT_4123 at 99.133 kb on - strand, within EX28DRAFT_4123 at 99.279 kb on + strand at 99.524 kb on - strand at 99.532 kb on + strand at 99.863 kb on - strand, within EX28DRAFT_4124 at 99.963 kb on + strand, within EX28DRAFT_4124 at 100.028 kb on + strand, within EX28DRAFT_4124 at 100.100 kb on - strand, within EX28DRAFT_4124 at 100.140 kb on - strand, within EX28DRAFT_4124 at 101.116 kb on + strand, within EX28DRAFT_4124 at 101.314 kb on + strand, within EX28DRAFT_4124 at 101.687 kb on - strand, within EX28DRAFT_4124 at 101.704 kb on + strand, within EX28DRAFT_4124 at 101.705 kb on - strand, within EX28DRAFT_4124 at 101.830 kb on - strand at 101.845 kb on + strand at 101.846 kb on - strand at 101.846 kb on - strand at 101.984 kb on + strand at 101.985 kb on - strand at 102.029 kb on + strand at 102.029 kb on + strand at 102.030 kb on - strand at 102.030 kb on - strand at 102.074 kb on + strand at 102.074 kb on + strand at 102.074 kb on + strand at 102.075 kb on - strand at 102.139 kb on - strand at 102.140 kb on + strand at 102.140 kb on + strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.141 kb on - strand at 102.162 kb on + strand at 102.162 kb on + strand at 102.162 kb on + strand at 102.163 kb on - strand at 102.320 kb on + strand at 102.320 kb on + strand at 102.321 kb on - strand at 102.321 kb on - strand at 102.365 kb on + strand at 102.368 kb on + strand at 102.368 kb on + strand at 102.368 kb on + strand at 102.491 kb on - strand at 102.512 kb on + strand at 102.512 kb on + strand at 102.512 kb on + strand at 102.512 kb on + strand at 102.543 kb on + strand at 102.617 kb on + strand at 102.672 kb on - strand at 102.824 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.849 kb on + strand at 102.850 kb on - strand at 102.850 kb on - strand at 102.850 kb on - strand at 102.850 kb on - strand at 102.913 kb on - strand, within EX28DRAFT_4125 at 102.950 kb on + strand, within EX28DRAFT_4125 at 102.950 kb on + strand, within EX28DRAFT_4125 at 102.951 kb on - strand, within EX28DRAFT_4125 at 103.037 kb on + strand, within EX28DRAFT_4125
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with sucrose and trichloroethylene 76.3 uM remove 98,370 + EX28DRAFT_4122 0.81 -2.2 98,371 - EX28DRAFT_4122 0.81 -0.1 98,387 - EX28DRAFT_4122 0.83 +0.1 98,387 - EX28DRAFT_4122 0.83 +0.1 98,444 + EX28DRAFT_4122 0.89 -0.1 98,529 + -0.6 98,529 + -2.8 98,602 + -0.9 98,836 - EX28DRAFT_4123 0.38 -0.1 99,133 - EX28DRAFT_4123 0.77 -0.3 99,279 + -0.7 99,524 - -0.3 99,532 + -0.3 99,863 - EX28DRAFT_4124 0.18 +0.6 99,963 + EX28DRAFT_4124 0.22 -0.6 100,028 + EX28DRAFT_4124 0.24 -0.3 100,100 - EX28DRAFT_4124 0.27 +0.2 100,140 - EX28DRAFT_4124 0.28 +0.6 101,116 + EX28DRAFT_4124 0.65 +0.0 101,314 + EX28DRAFT_4124 0.72 +0.4 101,687 - EX28DRAFT_4124 0.86 +0.4 101,704 + EX28DRAFT_4124 0.86 +0.5 101,705 - EX28DRAFT_4124 0.86 +0.6 101,830 - +0.2 101,845 + -0.8 101,846 - +1.6 101,846 - +0.6 101,984 + -0.5 101,985 - -0.4 102,029 + +0.6 102,029 + -0.2 102,030 - -0.7 102,030 - +0.2 102,074 + -0.1 102,074 + +0.3 102,074 + +2.3 102,075 - +1.2 102,139 - +0.6 102,140 + +0.3 102,140 + +0.1 102,141 - -0.3 102,141 - -0.1 102,141 - +0.4 102,141 - +1.1 102,141 - +0.1 102,141 - -0.2 102,162 + +0.9 102,162 + +0.3 102,162 + -1.5 102,163 - +0.1 102,320 + +0.5 102,320 + -0.8 102,321 - +0.3 102,321 - -0.3 102,365 + +0.3 102,368 + -0.3 102,368 + +0.0 102,368 + -0.5 102,491 - -0.6 102,512 + +2.1 102,512 + -0.8 102,512 + -1.8 102,512 + -1.0 102,543 + -0.7 102,617 + +0.4 102,672 - -0.4 102,824 + -0.2 102,849 + -0.1 102,849 + +0.6 102,849 + +1.9 102,849 + -0.1 102,849 + +0.1 102,849 + -0.0 102,849 + +0.3 102,850 - -2.1 102,850 - +0.6 102,850 - +0.8 102,850 - -0.1 102,913 - EX28DRAFT_4125 0.11 -0.5 102,950 + EX28DRAFT_4125 0.12 +0.3 102,950 + EX28DRAFT_4125 0.12 -0.3 102,951 - EX28DRAFT_4125 0.12 +0.1 103,037 + EX28DRAFT_4125 0.16 -0.9
Or see this region's nucleotide sequence