Experiment: 30_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21905 and AMB_RS21910 are separated by 61 nucleotides AMB_RS21910 and AMB_RS21915 are separated by 214 nucleotides AMB_RS21915 and AMB_RS21920 are separated by 22 nucleotides
AMB_RS21905: AMB_RS21905 - hypothetical protein, at 4,736,469 to 4,737,038
_RS21905
AMB_RS21910: AMB_RS21910 - hypothetical protein, at 4,737,100 to 4,737,339
_RS21910
AMB_RS21915: AMB_RS21915 - EamA/RhaT family transporter, at 4,737,554 to 4,738,447
_RS21915
AMB_RS21920: AMB_RS21920 - cation acetate symporter, at 4,738,470 to 4,740,134
_RS21920
Position (kb) 4737
4738
4739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4736.743 kb on - strand, within AMB_RS21905 at 4736.743 kb on - strand, within AMB_RS21905 at 4736.773 kb on - strand, within AMB_RS21905 at 4736.773 kb on - strand, within AMB_RS21905 at 4736.789 kb on + strand, within AMB_RS21905 at 4736.790 kb on - strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.845 kb on - strand, within AMB_RS21905 at 4736.845 kb on - strand, within AMB_RS21905 at 4736.845 kb on - strand, within AMB_RS21905 at 4736.895 kb on + strand, within AMB_RS21905 at 4736.896 kb on - strand, within AMB_RS21905 at 4736.896 kb on - strand, within AMB_RS21905 at 4736.896 kb on - strand, within AMB_RS21905 at 4736.955 kb on + strand, within AMB_RS21905 at 4737.181 kb on + strand, within AMB_RS21910 at 4737.181 kb on + strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.233 kb on + strand, within AMB_RS21910 at 4737.233 kb on + strand, within AMB_RS21910 at 4737.234 kb on - strand, within AMB_RS21910 at 4737.237 kb on - strand, within AMB_RS21910 at 4737.324 kb on - strand at 4737.378 kb on + strand at 4737.380 kb on + strand at 4737.380 kb on + strand at 4737.380 kb on + strand at 4737.380 kb on + strand at 4737.424 kb on + strand at 4737.487 kb on - strand at 4737.514 kb on - strand at 4737.534 kb on + strand at 4738.036 kb on - strand, within AMB_RS21915 at 4738.036 kb on - strand, within AMB_RS21915 at 4738.314 kb on - strand, within AMB_RS21915 at 4738.418 kb on + strand at 4738.418 kb on + strand at 4738.418 kb on + strand at 4738.419 kb on - strand at 4738.419 kb on - strand at 4738.419 kb on - strand at 4738.419 kb on - strand at 4738.419 kb on - strand at 4738.529 kb on + strand at 4738.530 kb on - strand at 4738.832 kb on - strand, within AMB_RS21920 at 4738.832 kb on - strand, within AMB_RS21920 at 4738.832 kb on - strand, within AMB_RS21920 at 4738.832 kb on - strand, within AMB_RS21920 at 4738.960 kb on + strand, within AMB_RS21920 at 4739.137 kb on + strand, within AMB_RS21920 at 4739.138 kb on - strand, within AMB_RS21920 at 4739.138 kb on - strand, within AMB_RS21920 at 4739.197 kb on + strand, within AMB_RS21920 at 4739.198 kb on - strand, within AMB_RS21920 at 4739.198 kb on - strand, within AMB_RS21920 at 4739.224 kb on + strand, within AMB_RS21920 at 4739.224 kb on + strand, within AMB_RS21920 at 4739.224 kb on + strand, within AMB_RS21920 at 4739.225 kb on - strand, within AMB_RS21920 at 4739.225 kb on - strand, within AMB_RS21920 at 4739.225 kb on - strand, within AMB_RS21920 at 4739.225 kb on - strand, within AMB_RS21920 at 4739.282 kb on + strand, within AMB_RS21920 at 4739.282 kb on + strand, within AMB_RS21920 at 4739.283 kb on - strand, within AMB_RS21920 at 4739.283 kb on - strand, within AMB_RS21920 at 4739.283 kb on - strand, within AMB_RS21920
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_3 remove 4,736,743 - AMB_RS21905 0.48 -0.3 4,736,743 - AMB_RS21905 0.48 -0.1 4,736,773 - AMB_RS21905 0.53 -0.4 4,736,773 - AMB_RS21905 0.53 -0.8 4,736,789 + AMB_RS21905 0.56 -0.0 4,736,790 - AMB_RS21905 0.56 -0.2 4,736,844 + AMB_RS21905 0.66 -1.2 4,736,844 + AMB_RS21905 0.66 +0.0 4,736,844 + AMB_RS21905 0.66 -0.4 4,736,844 + AMB_RS21905 0.66 -0.2 4,736,844 + AMB_RS21905 0.66 -1.6 4,736,844 + AMB_RS21905 0.66 -0.5 4,736,844 + AMB_RS21905 0.66 -0.3 4,736,844 + AMB_RS21905 0.66 -0.5 4,736,845 - AMB_RS21905 0.66 +0.4 4,736,845 - AMB_RS21905 0.66 -0.8 4,736,845 - AMB_RS21905 0.66 -1.0 4,736,895 + AMB_RS21905 0.75 -1.6 4,736,896 - AMB_RS21905 0.75 -0.1 4,736,896 - AMB_RS21905 0.75 -0.1 4,736,896 - AMB_RS21905 0.75 -0.2 4,736,955 + AMB_RS21905 0.85 -1.0 4,737,181 + AMB_RS21910 0.34 -0.1 4,737,181 + AMB_RS21910 0.34 +2.2 4,737,182 - AMB_RS21910 0.34 +0.6 4,737,182 - AMB_RS21910 0.34 -0.6 4,737,182 - AMB_RS21910 0.34 +0.3 4,737,182 - AMB_RS21910 0.34 -0.2 4,737,233 + AMB_RS21910 0.55 -0.1 4,737,233 + AMB_RS21910 0.55 -0.4 4,737,234 - AMB_RS21910 0.56 +0.2 4,737,237 - AMB_RS21910 0.57 -0.3 4,737,324 - -0.4 4,737,378 + -2.8 4,737,380 + -0.3 4,737,380 + +0.4 4,737,380 + +0.2 4,737,380 + +0.9 4,737,424 + -0.8 4,737,487 - -0.3 4,737,514 - -1.1 4,737,534 + -0.6 4,738,036 - AMB_RS21915 0.54 -0.1 4,738,036 - AMB_RS21915 0.54 -0.9 4,738,314 - AMB_RS21915 0.85 -1.0 4,738,418 + -1.6 4,738,418 + +0.1 4,738,418 + -0.4 4,738,419 - +0.4 4,738,419 - +0.5 4,738,419 - -0.2 4,738,419 - -1.9 4,738,419 - +0.2 4,738,529 + -0.2 4,738,530 - +0.1 4,738,832 - AMB_RS21920 0.22 +0.1 4,738,832 - AMB_RS21920 0.22 +0.1 4,738,832 - AMB_RS21920 0.22 +0.1 4,738,832 - AMB_RS21920 0.22 -0.2 4,738,960 + AMB_RS21920 0.29 -0.1 4,739,137 + AMB_RS21920 0.40 -0.4 4,739,138 - AMB_RS21920 0.40 +0.1 4,739,138 - AMB_RS21920 0.40 +0.1 4,739,197 + AMB_RS21920 0.44 -0.2 4,739,198 - AMB_RS21920 0.44 -1.1 4,739,198 - AMB_RS21920 0.44 -0.4 4,739,224 + AMB_RS21920 0.45 -0.3 4,739,224 + AMB_RS21920 0.45 -0.2 4,739,224 + AMB_RS21920 0.45 +0.6 4,739,225 - AMB_RS21920 0.45 -0.9 4,739,225 - AMB_RS21920 0.45 -0.1 4,739,225 - AMB_RS21920 0.45 -0.0 4,739,225 - AMB_RS21920 0.45 -0.7 4,739,282 + AMB_RS21920 0.49 +0.0 4,739,282 + AMB_RS21920 0.49 -0.1 4,739,283 - AMB_RS21920 0.49 +0.4 4,739,283 - AMB_RS21920 0.49 -0.4 4,739,283 - AMB_RS21920 0.49 +1.1
Or see this region's nucleotide sequence