Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26125 and ABID97_RS26130 are separated by 56 nucleotides ABID97_RS26130 and ABID97_RS26135 are separated by 21 nucleotides
ABID97_RS26125: ABID97_RS26125 - ABC transporter substrate-binding protein, at 149,480 to 150,412
_RS26125
ABID97_RS26130: ABID97_RS26130 - amino acid ABC transporter permease/ATP-binding protein, at 150,469 to 152,115
_RS26130
ABID97_RS26135: ABID97_RS26135 - acetamidase/formamidase family protein, at 152,137 to 153,378
_RS26135
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -1
0
1 at 149.747 kb on + strand, within ABID97_RS26125 at 149.747 kb on + strand, within ABID97_RS26125 at 149.748 kb on - strand, within ABID97_RS26125 at 149.748 kb on - strand, within ABID97_RS26125 at 149.811 kb on - strand, within ABID97_RS26125 at 149.886 kb on - strand, within ABID97_RS26125 at 149.928 kb on - strand, within ABID97_RS26125 at 150.033 kb on - strand, within ABID97_RS26125 at 150.033 kb on - strand, within ABID97_RS26125 at 150.110 kb on + strand, within ABID97_RS26125 at 150.164 kb on + strand, within ABID97_RS26125 at 150.165 kb on - strand, within ABID97_RS26125 at 150.165 kb on - strand, within ABID97_RS26125 at 150.487 kb on + strand at 150.487 kb on + strand at 150.487 kb on + strand at 152.185 kb on + strand at 152.516 kb on - strand, within ABID97_RS26135 at 152.656 kb on + strand, within ABID97_RS26135 at 152.657 kb on - strand, within ABID97_RS26135 at 152.860 kb on + strand, within ABID97_RS26135 at 152.860 kb on + strand, within ABID97_RS26135 at 152.861 kb on - strand, within ABID97_RS26135 at 152.911 kb on + strand, within ABID97_RS26135 at 152.912 kb on - strand, within ABID97_RS26135
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 149,747 + ABID97_RS26125 0.29 +0.0 149,747 + ABID97_RS26125 0.29 +1.5 149,748 - ABID97_RS26125 0.29 -1.2 149,748 - ABID97_RS26125 0.29 -0.5 149,811 - ABID97_RS26125 0.35 +0.4 149,886 - ABID97_RS26125 0.44 -1.1 149,928 - ABID97_RS26125 0.48 -0.3 150,033 - ABID97_RS26125 0.59 +0.2 150,033 - ABID97_RS26125 0.59 -0.5 150,110 + ABID97_RS26125 0.68 -0.4 150,164 + ABID97_RS26125 0.73 -0.1 150,165 - ABID97_RS26125 0.73 +0.6 150,165 - ABID97_RS26125 0.73 +0.2 150,487 + -0.1 150,487 + -0.8 150,487 + -0.3 152,185 + +0.3 152,516 - ABID97_RS26135 0.31 +0.3 152,656 + ABID97_RS26135 0.42 +0.1 152,657 - ABID97_RS26135 0.42 +0.4 152,860 + ABID97_RS26135 0.58 -0.7 152,860 + ABID97_RS26135 0.58 -0.3 152,861 - ABID97_RS26135 0.58 +0.2 152,911 + ABID97_RS26135 0.62 +0.0 152,912 - ABID97_RS26135 0.62 +0.7
Or see this region's nucleotide sequence