Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25170 and ABID97_RS25175 are separated by 10 nucleotides ABID97_RS25175 and ABID97_RS25180 are separated by 121 nucleotides ABID97_RS25180 and ABID97_RS25185 are separated by 39 nucleotides
ABID97_RS25170: ABID97_RS25170 - leucine-rich repeat-containing protein kinase family protein, at 5,214,322 to 5,215,632
_RS25170
ABID97_RS25175: ABID97_RS25175 - MBL fold metallo-hydrolase, at 5,215,643 to 5,216,719
_RS25175
ABID97_RS25180: ABID97_RS25180 - MerR family DNA-binding transcriptional regulator, at 5,216,841 to 5,217,239
_RS25180
ABID97_RS25185: ABID97_RS25185 - carbonate dehydratase, at 5,217,279 to 5,218,055
_RS25185
Position (kb)
5215
5216
5217 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14 at 5214.710 kb on + strand, within ABID97_RS25170 at 5214.711 kb on - strand, within ABID97_RS25170 at 5214.711 kb on - strand, within ABID97_RS25170 at 5215.347 kb on + strand, within ABID97_RS25170 at 5215.645 kb on - strand at 5215.645 kb on - strand at 5215.681 kb on - strand at 5216.226 kb on + strand, within ABID97_RS25175 at 5216.227 kb on - strand, within ABID97_RS25175 at 5216.229 kb on + strand, within ABID97_RS25175 at 5216.229 kb on + strand, within ABID97_RS25175 at 5216.229 kb on + strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.230 kb on - strand, within ABID97_RS25175 at 5216.358 kb on + strand, within ABID97_RS25175 at 5216.692 kb on - strand at 5216.721 kb on + strand at 5216.724 kb on - strand at 5216.767 kb on - strand at 5216.913 kb on + strand, within ABID97_RS25180 at 5216.914 kb on - strand, within ABID97_RS25180 at 5216.914 kb on - strand, within ABID97_RS25180 at 5216.914 kb on - strand, within ABID97_RS25180 at 5216.964 kb on + strand, within ABID97_RS25180 at 5217.057 kb on + strand, within ABID97_RS25180 at 5217.057 kb on + strand, within ABID97_RS25180 at 5217.057 kb on + strand, within ABID97_RS25180 at 5217.058 kb on - strand, within ABID97_RS25180 at 5217.058 kb on - strand, within ABID97_RS25180 at 5217.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 5,214,710 + ABID97_RS25170 0.30 +0.7 5,214,711 - ABID97_RS25170 0.30 +1.3 5,214,711 - ABID97_RS25170 0.30 +0.8 5,215,347 + ABID97_RS25170 0.78 +4.6 5,215,645 - +5.6 5,215,645 - +5.3 5,215,681 - +3.7 5,216,226 + ABID97_RS25175 0.54 +2.1 5,216,227 - ABID97_RS25175 0.54 +6.5 5,216,229 + ABID97_RS25175 0.54 +1.9 5,216,229 + ABID97_RS25175 0.54 +6.5 5,216,229 + ABID97_RS25175 0.54 +4.1 5,216,230 - ABID97_RS25175 0.55 +6.5 5,216,230 - ABID97_RS25175 0.55 +6.3 5,216,230 - ABID97_RS25175 0.55 +6.6 5,216,230 - ABID97_RS25175 0.55 +7.0 5,216,230 - ABID97_RS25175 0.55 +6.5 5,216,230 - ABID97_RS25175 0.55 +6.9 5,216,230 - ABID97_RS25175 0.55 +6.9 5,216,230 - ABID97_RS25175 0.55 +6.6 5,216,230 - ABID97_RS25175 0.55 +6.4 5,216,358 + ABID97_RS25175 0.66 +7.3 5,216,692 - +5.1 5,216,721 + +4.1 5,216,724 - +7.4 5,216,767 - +1.8 5,216,913 + ABID97_RS25180 0.18 +1.5 5,216,914 - ABID97_RS25180 0.18 +0.9 5,216,914 - ABID97_RS25180 0.18 -0.6 5,216,914 - ABID97_RS25180 0.18 +0.3 5,216,964 + ABID97_RS25180 0.31 +12.2 5,217,057 + ABID97_RS25180 0.54 +14.4 5,217,057 + ABID97_RS25180 0.54 +3.5 5,217,057 + ABID97_RS25180 0.54 +11.9 5,217,058 - ABID97_RS25180 0.54 +6.0 5,217,058 - ABID97_RS25180 0.54 +7.2 5,217,058 - +6.6
Or see this region's nucleotide sequence