Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25175

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25170 and ABID97_RS25175 are separated by 10 nucleotidesABID97_RS25175 and ABID97_RS25180 are separated by 121 nucleotidesABID97_RS25180 and ABID97_RS25185 are separated by 39 nucleotides ABID97_RS25170: ABID97_RS25170 - leucine-rich repeat-containing protein kinase family protein, at 5,214,322 to 5,215,632 _RS25170 ABID97_RS25175: ABID97_RS25175 - MBL fold metallo-hydrolase, at 5,215,643 to 5,216,719 _RS25175 ABID97_RS25180: ABID97_RS25180 - MerR family DNA-binding transcriptional regulator, at 5,216,841 to 5,217,239 _RS25180 ABID97_RS25185: ABID97_RS25185 - carbonate dehydratase, at 5,217,279 to 5,218,055 _RS25185 Position (kb) 5215 5216 5217Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14at 5214.710 kb on + strand, within ABID97_RS25170at 5214.711 kb on - strand, within ABID97_RS25170at 5214.711 kb on - strand, within ABID97_RS25170at 5215.347 kb on + strand, within ABID97_RS25170at 5215.645 kb on - strandat 5215.645 kb on - strandat 5215.681 kb on - strandat 5216.226 kb on + strand, within ABID97_RS25175at 5216.227 kb on - strand, within ABID97_RS25175at 5216.229 kb on + strand, within ABID97_RS25175at 5216.229 kb on + strand, within ABID97_RS25175at 5216.229 kb on + strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.230 kb on - strand, within ABID97_RS25175at 5216.358 kb on + strand, within ABID97_RS25175at 5216.692 kb on - strandat 5216.721 kb on + strandat 5216.724 kb on - strandat 5216.767 kb on - strandat 5216.913 kb on + strand, within ABID97_RS25180at 5216.914 kb on - strand, within ABID97_RS25180at 5216.914 kb on - strand, within ABID97_RS25180at 5216.914 kb on - strand, within ABID97_RS25180at 5216.964 kb on + strand, within ABID97_RS25180at 5217.057 kb on + strand, within ABID97_RS25180at 5217.057 kb on + strand, within ABID97_RS25180at 5217.057 kb on + strand, within ABID97_RS25180at 5217.058 kb on - strand, within ABID97_RS25180at 5217.058 kb on - strand, within ABID97_RS25180at 5217.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,214,710 + ABID97_RS25170 0.30 +0.7
5,214,711 - ABID97_RS25170 0.30 +1.3
5,214,711 - ABID97_RS25170 0.30 +0.8
5,215,347 + ABID97_RS25170 0.78 +4.6
5,215,645 - +5.6
5,215,645 - +5.3
5,215,681 - +3.7
5,216,226 + ABID97_RS25175 0.54 +2.1
5,216,227 - ABID97_RS25175 0.54 +6.5
5,216,229 + ABID97_RS25175 0.54 +1.9
5,216,229 + ABID97_RS25175 0.54 +6.5
5,216,229 + ABID97_RS25175 0.54 +4.1
5,216,230 - ABID97_RS25175 0.55 +6.5
5,216,230 - ABID97_RS25175 0.55 +6.3
5,216,230 - ABID97_RS25175 0.55 +6.6
5,216,230 - ABID97_RS25175 0.55 +7.0
5,216,230 - ABID97_RS25175 0.55 +6.5
5,216,230 - ABID97_RS25175 0.55 +6.9
5,216,230 - ABID97_RS25175 0.55 +6.9
5,216,230 - ABID97_RS25175 0.55 +6.6
5,216,230 - ABID97_RS25175 0.55 +6.4
5,216,358 + ABID97_RS25175 0.66 +7.3
5,216,692 - +5.1
5,216,721 + +4.1
5,216,724 - +7.4
5,216,767 - +1.8
5,216,913 + ABID97_RS25180 0.18 +1.5
5,216,914 - ABID97_RS25180 0.18 +0.9
5,216,914 - ABID97_RS25180 0.18 -0.6
5,216,914 - ABID97_RS25180 0.18 +0.3
5,216,964 + ABID97_RS25180 0.31 +12.2
5,217,057 + ABID97_RS25180 0.54 +14.4
5,217,057 + ABID97_RS25180 0.54 +3.5
5,217,057 + ABID97_RS25180 0.54 +11.9
5,217,058 - ABID97_RS25180 0.54 +6.0
5,217,058 - ABID97_RS25180 0.54 +7.2
5,217,058 - +6.6

Or see this region's nucleotide sequence