Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15525 and ABID97_RS15530 are separated by 80 nucleotides ABID97_RS15530 and ABID97_RS15535 are separated by 13 nucleotides ABID97_RS15535 and ABID97_RS15540 are separated by 12 nucleotides
ABID97_RS15525: ABID97_RS15525 - serine O-acetyltransferase EpsC, at 3,210,347 to 3,211,261
_RS15525
ABID97_RS15530: ABID97_RS15530 - NAD(P)/FAD-dependent oxidoreductase, at 3,211,342 to 3,212,709
_RS15530
ABID97_RS15535: ABID97_RS15535 - Asp/Glu/hydantoin racemase, at 3,212,723 to 3,213,400
_RS15535
ABID97_RS15540: ABID97_RS15540 - 2-dehydropantoate 2-reductase, at 3,213,413 to 3,214,345
_RS15540
Position (kb)
3211
3212
3213 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3210.554 kb on + strand, within ABID97_RS15525 at 3210.554 kb on + strand, within ABID97_RS15525 at 3210.746 kb on + strand, within ABID97_RS15525 at 3210.747 kb on - strand, within ABID97_RS15525 at 3210.794 kb on + strand, within ABID97_RS15525 at 3211.010 kb on + strand, within ABID97_RS15525 at 3211.116 kb on - strand, within ABID97_RS15525 at 3211.305 kb on - strand at 3211.645 kb on + strand, within ABID97_RS15530 at 3211.646 kb on - strand, within ABID97_RS15530 at 3212.128 kb on + strand, within ABID97_RS15530 at 3212.308 kb on + strand, within ABID97_RS15530 at 3212.309 kb on - strand, within ABID97_RS15530 at 3212.432 kb on - strand, within ABID97_RS15530 at 3212.596 kb on + strand at 3212.916 kb on + strand, within ABID97_RS15535 at 3212.916 kb on + strand, within ABID97_RS15535 at 3212.917 kb on - strand, within ABID97_RS15535 at 3212.917 kb on - strand, within ABID97_RS15535 at 3213.374 kb on - strand at 3213.462 kb on + strand at 3213.462 kb on + strand at 3213.462 kb on + strand at 3213.463 kb on - strand at 3213.463 kb on - strand at 3213.463 kb on - strand at 3213.573 kb on + strand, within ABID97_RS15540 at 3213.573 kb on + strand, within ABID97_RS15540
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,210,554 + ABID97_RS15525 0.23 -0.4 3,210,554 + ABID97_RS15525 0.23 +1.5 3,210,746 + ABID97_RS15525 0.44 -0.3 3,210,747 - ABID97_RS15525 0.44 -0.1 3,210,794 + ABID97_RS15525 0.49 -0.3 3,211,010 + ABID97_RS15525 0.72 -0.5 3,211,116 - ABID97_RS15525 0.84 +1.4 3,211,305 - -0.6 3,211,645 + ABID97_RS15530 0.22 +0.4 3,211,646 - ABID97_RS15530 0.22 -0.7 3,212,128 + ABID97_RS15530 0.57 +0.7 3,212,308 + ABID97_RS15530 0.71 +0.6 3,212,309 - ABID97_RS15530 0.71 +0.3 3,212,432 - ABID97_RS15530 0.80 +0.5 3,212,596 + -2.0 3,212,916 + ABID97_RS15535 0.28 +0.2 3,212,916 + ABID97_RS15535 0.28 -0.0 3,212,917 - ABID97_RS15535 0.29 -0.1 3,212,917 - ABID97_RS15535 0.29 -0.1 3,213,374 - +0.2 3,213,462 + -1.4 3,213,462 + -0.5 3,213,462 + +1.5 3,213,463 - +2.5 3,213,463 - -0.1 3,213,463 - +0.3 3,213,573 + ABID97_RS15540 0.17 -1.5 3,213,573 + ABID97_RS15540 0.17 +0.1
Or see this region's nucleotide sequence