Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15530

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15525 and ABID97_RS15530 are separated by 80 nucleotidesABID97_RS15530 and ABID97_RS15535 are separated by 13 nucleotidesABID97_RS15535 and ABID97_RS15540 are separated by 12 nucleotides ABID97_RS15525: ABID97_RS15525 - serine O-acetyltransferase EpsC, at 3,210,347 to 3,211,261 _RS15525 ABID97_RS15530: ABID97_RS15530 - NAD(P)/FAD-dependent oxidoreductase, at 3,211,342 to 3,212,709 _RS15530 ABID97_RS15535: ABID97_RS15535 - Asp/Glu/hydantoin racemase, at 3,212,723 to 3,213,400 _RS15535 ABID97_RS15540: ABID97_RS15540 - 2-dehydropantoate 2-reductase, at 3,213,413 to 3,214,345 _RS15540 Position (kb) 3211 3212 3213Strain fitness (log2 ratio) -2 -1 0 1 2at 3210.554 kb on + strand, within ABID97_RS15525at 3210.554 kb on + strand, within ABID97_RS15525at 3210.746 kb on + strand, within ABID97_RS15525at 3210.747 kb on - strand, within ABID97_RS15525at 3210.794 kb on + strand, within ABID97_RS15525at 3211.010 kb on + strand, within ABID97_RS15525at 3211.116 kb on - strand, within ABID97_RS15525at 3211.305 kb on - strandat 3211.645 kb on + strand, within ABID97_RS15530at 3211.646 kb on - strand, within ABID97_RS15530at 3212.128 kb on + strand, within ABID97_RS15530at 3212.308 kb on + strand, within ABID97_RS15530at 3212.309 kb on - strand, within ABID97_RS15530at 3212.432 kb on - strand, within ABID97_RS15530at 3212.596 kb on + strandat 3212.916 kb on + strand, within ABID97_RS15535at 3212.916 kb on + strand, within ABID97_RS15535at 3212.917 kb on - strand, within ABID97_RS15535at 3212.917 kb on - strand, within ABID97_RS15535at 3213.374 kb on - strandat 3213.462 kb on + strandat 3213.462 kb on + strandat 3213.462 kb on + strandat 3213.463 kb on - strandat 3213.463 kb on - strandat 3213.463 kb on - strandat 3213.573 kb on + strand, within ABID97_RS15540at 3213.573 kb on + strand, within ABID97_RS15540

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,210,554 + ABID97_RS15525 0.23 -0.4
3,210,554 + ABID97_RS15525 0.23 +1.5
3,210,746 + ABID97_RS15525 0.44 -0.3
3,210,747 - ABID97_RS15525 0.44 -0.1
3,210,794 + ABID97_RS15525 0.49 -0.3
3,211,010 + ABID97_RS15525 0.72 -0.5
3,211,116 - ABID97_RS15525 0.84 +1.4
3,211,305 - -0.6
3,211,645 + ABID97_RS15530 0.22 +0.4
3,211,646 - ABID97_RS15530 0.22 -0.7
3,212,128 + ABID97_RS15530 0.57 +0.7
3,212,308 + ABID97_RS15530 0.71 +0.6
3,212,309 - ABID97_RS15530 0.71 +0.3
3,212,432 - ABID97_RS15530 0.80 +0.5
3,212,596 + -2.0
3,212,916 + ABID97_RS15535 0.28 +0.2
3,212,916 + ABID97_RS15535 0.28 -0.0
3,212,917 - ABID97_RS15535 0.29 -0.1
3,212,917 - ABID97_RS15535 0.29 -0.1
3,213,374 - +0.2
3,213,462 + -1.4
3,213,462 + -0.5
3,213,462 + +1.5
3,213,463 - +2.5
3,213,463 - -0.1
3,213,463 - +0.3
3,213,573 + ABID97_RS15540 0.17 -1.5
3,213,573 + ABID97_RS15540 0.17 +0.1

Or see this region's nucleotide sequence