Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13950

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13945 and ABID97_RS13950 are separated by 21 nucleotidesABID97_RS13950 and ABID97_RS13955 overlap by 1 nucleotides ABID97_RS13945: ABID97_RS13945 - acyl-CoA carboxylase subunit beta, at 2,896,262 to 2,897,806 _RS13945 ABID97_RS13950: ABID97_RS13950 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,897,828 to 2,899,876 _RS13950 ABID97_RS13955: ABID97_RS13955 - biotin synthase BioB, at 2,899,876 to 2,900,901 _RS13955 Position (kb) 2897 2898 2899 2900Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10at 2896.985 kb on + strand, within ABID97_RS13945at 2896.986 kb on - strand, within ABID97_RS13945at 2896.992 kb on - strand, within ABID97_RS13945at 2897.115 kb on - strand, within ABID97_RS13945at 2897.478 kb on - strand, within ABID97_RS13945at 2897.667 kb on - strandat 2897.921 kb on + strandat 2897.921 kb on + strandat 2898.006 kb on - strandat 2898.494 kb on + strand, within ABID97_RS13950at 2898.495 kb on - strand, within ABID97_RS13950at 2898.650 kb on + strand, within ABID97_RS13950at 2898.680 kb on + strand, within ABID97_RS13950at 2898.681 kb on - strand, within ABID97_RS13950at 2898.975 kb on - strand, within ABID97_RS13950at 2898.998 kb on + strand, within ABID97_RS13950at 2898.998 kb on + strand, within ABID97_RS13950at 2899.259 kb on + strand, within ABID97_RS13950at 2899.451 kb on + strand, within ABID97_RS13950at 2899.452 kb on - strand, within ABID97_RS13950at 2899.452 kb on - strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.643 kb on + strand, within ABID97_RS13950at 2899.644 kb on - strand, within ABID97_RS13950at 2900.104 kb on + strand, within ABID97_RS13955at 2900.104 kb on + strand, within ABID97_RS13955at 2900.105 kb on - strand, within ABID97_RS13955at 2900.374 kb on + strand, within ABID97_RS13955at 2900.377 kb on + strand, within ABID97_RS13955at 2900.377 kb on + strand, within ABID97_RS13955at 2900.378 kb on - strand, within ABID97_RS13955at 2900.378 kb on - strand, within ABID97_RS13955at 2900.408 kb on - strand, within ABID97_RS13955at 2900.410 kb on + strand, within ABID97_RS13955at 2900.410 kb on + strand, within ABID97_RS13955at 2900.610 kb on - strand, within ABID97_RS13955

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,896,985 + ABID97_RS13945 0.47 -1.7
2,896,986 - ABID97_RS13945 0.47 -2.5
2,896,992 - ABID97_RS13945 0.47 -2.7
2,897,115 - ABID97_RS13945 0.55 -3.7
2,897,478 - ABID97_RS13945 0.79 -2.3
2,897,667 - -0.1
2,897,921 + -1.9
2,897,921 + +1.5
2,898,006 - -1.9
2,898,494 + ABID97_RS13950 0.33 -1.9
2,898,495 - ABID97_RS13950 0.33 -3.1
2,898,650 + ABID97_RS13950 0.40 -2.3
2,898,680 + ABID97_RS13950 0.42 -1.2
2,898,681 - ABID97_RS13950 0.42 -0.6
2,898,975 - ABID97_RS13950 0.56 -3.7
2,898,998 + ABID97_RS13950 0.57 -0.9
2,898,998 + ABID97_RS13950 0.57 -0.5
2,899,259 + ABID97_RS13950 0.70 -1.8
2,899,451 + ABID97_RS13950 0.79 -3.8
2,899,452 - ABID97_RS13950 0.79 -2.4
2,899,452 - ABID97_RS13950 0.79 -3.0
2,899,643 + ABID97_RS13950 0.89 -0.2
2,899,643 + ABID97_RS13950 0.89 -1.8
2,899,643 + ABID97_RS13950 0.89 +0.3
2,899,643 + ABID97_RS13950 0.89 -3.3
2,899,644 - ABID97_RS13950 0.89 -2.6
2,900,104 + ABID97_RS13955 0.22 +1.5
2,900,104 + ABID97_RS13955 0.22 -0.2
2,900,105 - ABID97_RS13955 0.22 +2.5
2,900,374 + ABID97_RS13955 0.49 +0.7
2,900,377 + ABID97_RS13955 0.49 +2.5
2,900,377 + ABID97_RS13955 0.49 -0.1
2,900,378 - ABID97_RS13955 0.49 +10.1
2,900,378 - ABID97_RS13955 0.49 +10.3
2,900,408 - ABID97_RS13955 0.52 +4.8
2,900,410 + ABID97_RS13955 0.52 +7.1
2,900,410 + ABID97_RS13955 0.52 +4.8
2,900,610 - ABID97_RS13955 0.72 +0.4

Or see this region's nucleotide sequence