Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12870

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12860 and ABID97_RS12865 are separated by 0 nucleotidesABID97_RS12865 and ABID97_RS12870 overlap by 4 nucleotidesABID97_RS12870 and ABID97_RS12875 are separated by 19 nucleotides ABID97_RS12860: ABID97_RS12860 - HAD-IA family hydrolase, at 2,665,098 to 2,665,901 _RS12860 ABID97_RS12865: ABID97_RS12865 - ribulose-phosphate 3-epimerase, at 2,665,902 to 2,666,606 _RS12865 ABID97_RS12870: ABID97_RS12870 - HAD-IA family hydrolase, at 2,666,603 to 2,667,331 _RS12870 ABID97_RS12875: ABID97_RS12875 - class 1 fructose-bisphosphatase, at 2,667,351 to 2,668,424 _RS12875 Position (kb) 2666 2667 2668Strain fitness (log2 ratio) -1 0 1at 2665.900 kb on - strandat 2666.037 kb on + strand, within ABID97_RS12865at 2667.649 kb on - strand, within ABID97_RS12875at 2667.682 kb on - strand, within ABID97_RS12875at 2668.195 kb on - strand, within ABID97_RS12875

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,665,900 - -0.3
2,666,037 + ABID97_RS12865 0.19 -0.1
2,667,649 - ABID97_RS12875 0.28 +1.1
2,667,682 - ABID97_RS12875 0.31 +0.2
2,668,195 - ABID97_RS12875 0.79 +1.5

Or see this region's nucleotide sequence