Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09395

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09390 and ABID97_RS09395 are separated by 182 nucleotidesABID97_RS09395 and ABID97_RS09400 are separated by 14 nucleotides ABID97_RS09390: ABID97_RS09390 - helix-turn-helix domain-containing protein, at 1,973,242 to 1,974,381 _RS09390 ABID97_RS09395: ABID97_RS09395 - (2Fe-2S)-binding protein, at 1,974,564 to 1,975,061 _RS09395 ABID97_RS09400: ABID97_RS09400 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,975,076 to 1,977,526 _RS09400 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -1 0 1 2 3at 1973.956 kb on + strand, within ABID97_RS09390at 1973.957 kb on - strand, within ABID97_RS09390at 1974.490 kb on - strandat 1974.494 kb on + strandat 1974.494 kb on + strandat 1974.494 kb on + strandat 1974.494 kb on + strandat 1974.571 kb on + strandat 1974.572 kb on - strandat 1975.166 kb on + strandat 1975.166 kb on + strandat 1975.167 kb on - strandat 1975.167 kb on - strandat 1975.167 kb on - strandat 1975.167 kb on - strandat 1975.415 kb on + strand, within ABID97_RS09400at 1975.415 kb on + strand, within ABID97_RS09400at 1975.416 kb on - strand, within ABID97_RS09400at 1975.416 kb on - strand, within ABID97_RS09400at 1975.589 kb on + strand, within ABID97_RS09400at 1975.721 kb on + strand, within ABID97_RS09400at 1975.751 kb on + strand, within ABID97_RS09400at 1975.881 kb on - strand, within ABID97_RS09400at 1975.881 kb on - strand, within ABID97_RS09400

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,973,956 + ABID97_RS09390 0.63 +0.8
1,973,957 - ABID97_RS09390 0.63 +0.0
1,974,490 - -0.2
1,974,494 + +0.2
1,974,494 + -1.1
1,974,494 + +1.0
1,974,494 + +0.2
1,974,571 + -0.3
1,974,572 - +3.2
1,975,166 + -0.2
1,975,166 + -0.3
1,975,167 - +0.8
1,975,167 - -0.9
1,975,167 - +2.2
1,975,167 - +0.1
1,975,415 + ABID97_RS09400 0.14 -1.1
1,975,415 + ABID97_RS09400 0.14 -0.1
1,975,416 - ABID97_RS09400 0.14 -0.1
1,975,416 - ABID97_RS09400 0.14 -0.2
1,975,589 + ABID97_RS09400 0.21 +3.2
1,975,721 + ABID97_RS09400 0.26 +0.8
1,975,751 + ABID97_RS09400 0.28 +0.1
1,975,881 - ABID97_RS09400 0.33 -0.4
1,975,881 - ABID97_RS09400 0.33 +1.3

Or see this region's nucleotide sequence