Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29155

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29150 and AO353_29155 are separated by 93 nucleotidesAO353_29155 and AO353_29160 are separated by 34 nucleotides AO353_29150: AO353_29150 - amidase, at 6,333,283 to 6,334,989 _29150 AO353_29155: AO353_29155 - glyoxalase, at 6,335,083 to 6,335,475 _29155 AO353_29160: AO353_29160 - GTP pyrophosphokinase, at 6,335,510 to 6,335,932 _29160 Position (kb) 6335 6336Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 6334.087 kb on + strand, within AO353_29150at 6334.088 kb on - strand, within AO353_29150at 6334.088 kb on - strand, within AO353_29150at 6334.088 kb on - strand, within AO353_29150at 6334.088 kb on - strand, within AO353_29150at 6334.150 kb on + strand, within AO353_29150at 6334.150 kb on + strand, within AO353_29150at 6334.150 kb on + strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.151 kb on - strand, within AO353_29150at 6334.558 kb on + strand, within AO353_29150at 6334.558 kb on + strand, within AO353_29150at 6334.558 kb on + strand, within AO353_29150at 6334.559 kb on - strand, within AO353_29150at 6334.559 kb on - strand, within AO353_29150at 6334.559 kb on - strand, within AO353_29150at 6334.559 kb on - strand, within AO353_29150at 6334.695 kb on - strand, within AO353_29150at 6334.833 kb on - strandat 6334.894 kb on + strandat 6334.894 kb on + strandat 6334.895 kb on - strandat 6334.895 kb on - strandat 6334.987 kb on + strandat 6334.987 kb on + strandat 6334.988 kb on - strandat 6334.999 kb on + strandat 6334.999 kb on + strandat 6334.999 kb on + strandat 6335.096 kb on - strandat 6335.096 kb on - strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.107 kb on + strandat 6335.108 kb on - strandat 6335.108 kb on - strandat 6335.108 kb on - strandat 6335.108 kb on - strandat 6335.108 kb on - strandat 6335.108 kb on - strandat 6335.191 kb on + strand, within AO353_29155at 6335.191 kb on + strand, within AO353_29155at 6335.191 kb on + strandat 6335.191 kb on + strand, within AO353_29155at 6335.191 kb on + strand, within AO353_29155at 6335.192 kb on - strand, within AO353_29155at 6335.192 kb on - strand, within AO353_29155at 6335.192 kb on - strand, within AO353_29155at 6335.192 kb on - strand, within AO353_29155at 6335.192 kb on - strand, within AO353_29155at 6335.333 kb on + strand, within AO353_29155at 6335.357 kb on + strand, within AO353_29155at 6335.378 kb on + strand, within AO353_29155at 6335.379 kb on - strand, within AO353_29155at 6335.419 kb on + strand, within AO353_29155at 6335.419 kb on + strand, within AO353_29155at 6335.419 kb on + strand, within AO353_29155at 6335.419 kb on + strand, within AO353_29155at 6335.420 kb on - strand, within AO353_29155at 6335.491 kb on + strandat 6335.491 kb on + strandat 6335.491 kb on + strandat 6335.492 kb on - strandat 6335.492 kb on - strandat 6335.492 kb on - strandat 6335.492 kb on - strandat 6335.492 kb on - strandat 6335.674 kb on - strand, within AO353_29160at 6335.674 kb on - strand, within AO353_29160at 6335.674 kb on - strand, within AO353_29160at 6335.853 kb on + strand, within AO353_29160at 6335.854 kb on - strand, within AO353_29160at 6335.854 kb on - strand, within AO353_29160at 6335.854 kb on - strand, within AO353_29160at 6335.854 kb on - strand, within AO353_29160at 6335.974 kb on + strandat 6335.974 kb on + strandat 6335.974 kb on + strandat 6335.974 kb on + strandat 6335.974 kb on + strandat 6335.975 kb on - strandat 6335.975 kb on - strandat 6335.975 kb on - strandat 6335.975 kb on - strandat 6335.975 kb on - strandat 6335.975 kb on - strandat 6336.251 kb on + strandat 6336.251 kb on + strandat 6336.251 kb on + strandat 6336.251 kb on + strandat 6336.251 kb on + strandat 6336.252 kb on - strandat 6336.252 kb on - strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.284 kb on + strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.285 kb on - strandat 6336.286 kb on + strandat 6336.286 kb on + strandat 6336.286 kb on + strandat 6336.287 kb on - strandat 6336.318 kb on - strandat 6336.334 kb on - strandat 6336.347 kb on + strandat 6336.348 kb on - strandat 6336.348 kb on - strandat 6336.348 kb on - strandat 6336.348 kb on - strandat 6336.388 kb on - strandat 6336.388 kb on - strandat 6336.435 kb on + strandat 6336.435 kb on + strandat 6336.435 kb on + strandat 6336.436 kb on - strandat 6336.436 kb on - strandat 6336.436 kb on - strandat 6336.436 kb on - strandat 6336.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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6,334,087 + AO353_29150 0.47 -0.2
6,334,088 - AO353_29150 0.47 -0.5
6,334,088 - AO353_29150 0.47 +0.2
6,334,088 - AO353_29150 0.47 -0.6
6,334,088 - AO353_29150 0.47 -0.3
6,334,150 + AO353_29150 0.51 +0.4
6,334,150 + AO353_29150 0.51 +0.9
6,334,150 + AO353_29150 0.51 -0.1
6,334,151 - AO353_29150 0.51 -0.6
6,334,151 - AO353_29150 0.51 -0.1
6,334,151 - AO353_29150 0.51 -1.2
6,334,151 - AO353_29150 0.51 +0.4
6,334,151 - AO353_29150 0.51 +0.8
6,334,151 - AO353_29150 0.51 +0.2
6,334,151 - AO353_29150 0.51 -0.6
6,334,151 - AO353_29150 0.51 +0.6
6,334,151 - AO353_29150 0.51 +0.6
6,334,151 - AO353_29150 0.51 -0.3
6,334,151 - AO353_29150 0.51 +0.7
6,334,151 - AO353_29150 0.51 -0.1
6,334,558 + AO353_29150 0.75 +0.4
6,334,558 + AO353_29150 0.75 +0.8
6,334,558 + AO353_29150 0.75 -0.2
6,334,559 - AO353_29150 0.75 -0.1
6,334,559 - AO353_29150 0.75 -0.4
6,334,559 - AO353_29150 0.75 +0.4
6,334,559 - AO353_29150 0.75 -1.2
6,334,695 - AO353_29150 0.83 -1.0
6,334,833 - +0.3
6,334,894 + -1.4
6,334,894 + +0.1
6,334,895 - -1.2
6,334,895 - +0.3
6,334,987 + -1.1
6,334,987 + +0.5
6,334,988 - -0.8
6,334,999 + -1.7
6,334,999 + +0.6
6,334,999 + -0.1
6,335,096 - -0.2
6,335,096 - -1.6
6,335,107 + +0.0
6,335,107 + +0.8
6,335,107 + -1.1
6,335,107 + -0.2
6,335,107 + -0.2
6,335,107 + -0.9
6,335,107 + +2.3
6,335,107 + +0.9
6,335,107 + +0.3
6,335,107 + -0.6
6,335,107 + -0.9
6,335,108 - +0.6
6,335,108 - -2.6
6,335,108 - -0.1
6,335,108 - -2.2
6,335,108 - +0.4
6,335,108 - -0.8
6,335,191 + AO353_29155 0.27 +0.8
6,335,191 + AO353_29155 0.27 +1.6
6,335,191 + -0.9
6,335,191 + AO353_29155 0.27 -2.5
6,335,191 + AO353_29155 0.27 +0.4
6,335,192 - AO353_29155 0.28 -1.0
6,335,192 - AO353_29155 0.28 +0.8
6,335,192 - AO353_29155 0.28 +0.6
6,335,192 - AO353_29155 0.28 +2.5
6,335,192 - AO353_29155 0.28 +0.4
6,335,333 + AO353_29155 0.64 +0.1
6,335,357 + AO353_29155 0.70 +0.8
6,335,378 + AO353_29155 0.75 +0.2
6,335,379 - AO353_29155 0.75 -2.1
6,335,419 + AO353_29155 0.85 +0.6
6,335,419 + AO353_29155 0.85 +0.7
6,335,419 + AO353_29155 0.85 +3.6
6,335,419 + AO353_29155 0.85 +0.7
6,335,420 - AO353_29155 0.86 -0.6
6,335,491 + -0.5
6,335,491 + -0.1
6,335,491 + -0.5
6,335,492 - -1.4
6,335,492 - -1.1
6,335,492 - -0.6
6,335,492 - -1.8
6,335,492 - -0.5
6,335,674 - AO353_29160 0.39 +0.0
6,335,674 - AO353_29160 0.39 +0.2
6,335,674 - AO353_29160 0.39 +0.6
6,335,853 + AO353_29160 0.81 -1.4
6,335,854 - AO353_29160 0.81 -1.1
6,335,854 - AO353_29160 0.81 -0.2
6,335,854 - AO353_29160 0.81 -1.6
6,335,854 - AO353_29160 0.81 +0.1
6,335,974 + -1.4
6,335,974 + +0.4
6,335,974 + -0.5
6,335,974 + +1.1
6,335,974 + -2.2
6,335,975 - +1.7
6,335,975 - -0.9
6,335,975 - +0.1
6,335,975 - -1.0
6,335,975 - +0.2
6,335,975 - +0.7
6,336,251 + +0.5
6,336,251 + -0.6
6,336,251 + -1.6
6,336,251 + +0.6
6,336,251 + -1.0
6,336,252 - +0.0
6,336,252 - -1.1
6,336,284 + +0.2
6,336,284 + +1.5
6,336,284 + +0.4
6,336,284 + -0.6
6,336,284 + +0.5
6,336,284 + -0.9
6,336,284 + +0.5
6,336,284 + +0.9
6,336,284 + -0.8
6,336,284 + +0.9
6,336,284 + +0.2
6,336,285 - -0.6
6,336,285 - -1.5
6,336,285 - -1.1
6,336,285 - -0.7
6,336,285 - +0.2
6,336,285 - -1.5
6,336,285 - -0.4
6,336,285 - -2.1
6,336,285 - -0.8
6,336,285 - -0.9
6,336,285 - -0.2
6,336,285 - +0.4
6,336,285 - -0.4
6,336,285 - +1.3
6,336,285 - +0.2
6,336,285 - -1.9
6,336,286 + -0.9
6,336,286 + -0.6
6,336,286 + +0.1
6,336,287 - +0.1
6,336,318 - -0.6
6,336,334 - +0.9
6,336,347 + -1.1
6,336,348 - +0.1
6,336,348 - -1.2
6,336,348 - -0.2
6,336,348 - +5.8
6,336,388 - +0.5
6,336,388 - +0.2
6,336,435 + -0.3
6,336,435 + -0.6
6,336,435 + +0.6
6,336,436 - +0.4
6,336,436 - -0.3
6,336,436 - -1.0
6,336,436 - +0.4
6,336,464 + +0.5

Or see this region's nucleotide sequence