Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27630

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27625 and ABID97_RS27630 are separated by 77 nucleotidesABID97_RS27630 and ABID97_RS27635 are separated by 113 nucleotidesABID97_RS27635 and ABID97_RS27640 are separated by 10 nucleotides ABID97_RS27625: ABID97_RS27625 - NAD(P)-binding domain-containing protein, at 444,757 to 445,656 _RS27625 ABID97_RS27630: ABID97_RS27630 - AraC family transcriptional regulator, at 445,734 to 446,495 _RS27630 ABID97_RS27635: ABID97_RS27635 - NAD(P)H-dependent oxidoreductase, at 446,609 to 447,427 _RS27635 ABID97_RS27640: ABID97_RS27640 - VOC family protein, at 447,438 to 447,902 _RS27640 Position (kb) 445 446 447Strain fitness (log2 ratio) -1 0 1at 445.127 kb on - strand, within ABID97_RS27625at 445.592 kb on + strandat 445.660 kb on - strandat 445.824 kb on + strand, within ABID97_RS27630at 446.016 kb on + strand, within ABID97_RS27630at 446.363 kb on + strand, within ABID97_RS27630at 447.186 kb on + strand, within ABID97_RS27635

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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445,127 - ABID97_RS27625 0.41 -0.3
445,592 + -0.3
445,660 - -0.2
445,824 + ABID97_RS27630 0.12 +0.1
446,016 + ABID97_RS27630 0.37 +0.0
446,363 + ABID97_RS27630 0.83 -0.2
447,186 + ABID97_RS27635 0.70 -0.1

Or see this region's nucleotide sequence