Experiment: Ammonium chloride (N); RCH2 media; shaking
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24755 and EX31_RS24760 are separated by 19 nucleotides EX31_RS24760 and EX31_RS24765 are separated by 406 nucleotides EX31_RS24765 and EX31_RS24770 are separated by 141 nucleotides EX31_RS24770 and EX31_RS24775 are separated by 3 nucleotides
EX31_RS24755: EX31_RS24755 - prolyl aminopeptidase, at 722,696 to 723,652
_RS24755
EX31_RS24760: EX31_RS24760 - DNA polymerase III subunit theta, at 723,672 to 723,902
_RS24760
EX31_RS24765: EX31_RS24765 - non-heme ferritin, at 724,309 to 724,815
_RS24765
EX31_RS24770: EX31_RS24770 - copper homeostasis periplasmic binding protein CopC, at 724,957 to 725,340
_RS24770
EX31_RS24775: EX31_RS24775 - copper homeostasis membrane protein CopD, at 725,344 to 726,228
_RS24775
Position (kb) 724
725 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 723.457 kb on + strand, within EX31_RS24755 at 723.500 kb on - strand, within EX31_RS24755 at 723.691 kb on + strand at 723.691 kb on + strand at 723.691 kb on + strand at 723.692 kb on - strand at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.710 kb on + strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.711 kb on - strand, within EX31_RS24760 at 723.751 kb on + strand, within EX31_RS24760 at 723.751 kb on + strand, within EX31_RS24760 at 723.752 kb on - strand, within EX31_RS24760 at 723.811 kb on + strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.812 kb on - strand, within EX31_RS24760 at 723.858 kb on - strand, within EX31_RS24760 at 723.858 kb on - strand, within EX31_RS24760 at 723.902 kb on + strand at 723.937 kb on - strand at 723.937 kb on - strand at 723.978 kb on + strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 723.979 kb on - strand at 724.012 kb on + strand at 724.013 kb on - strand at 724.053 kb on - strand at 724.076 kb on + strand at 724.119 kb on + strand at 724.229 kb on - strand at 724.229 kb on - strand at 724.285 kb on + strand at 724.338 kb on + strand at 724.376 kb on + strand, within EX31_RS24765 at 724.486 kb on + strand, within EX31_RS24765 at 724.579 kb on + strand, within EX31_RS24765 at 724.580 kb on - strand, within EX31_RS24765 at 724.675 kb on + strand, within EX31_RS24765 at 724.675 kb on + strand, within EX31_RS24765 at 724.814 kb on - strand at 724.922 kb on + strand at 724.922 kb on + strand at 724.924 kb on + strand at 725.023 kb on - strand, within EX31_RS24770 at 725.088 kb on - strand, within EX31_RS24770 at 725.221 kb on - strand, within EX31_RS24770 at 725.221 kb on - strand, within EX31_RS24770 at 725.221 kb on - strand, within EX31_RS24770 at 725.266 kb on + strand, within EX31_RS24770 at 725.266 kb on + strand, within EX31_RS24770 at 725.266 kb on + strand, within EX31_RS24770 at 725.267 kb on - strand, within EX31_RS24770 at 725.267 kb on - strand, within EX31_RS24770 at 725.328 kb on + strand at 725.329 kb on - strand at 725.527 kb on - strand, within EX31_RS24775 at 725.604 kb on - strand, within EX31_RS24775 at 725.639 kb on + strand, within EX31_RS24775 at 725.640 kb on - strand, within EX31_RS24775
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N); RCH2 media; shaking remove 723,457 + EX31_RS24755 0.80 +0.1 723,500 - EX31_RS24755 0.84 +0.1 723,691 + -2.4 723,691 + -1.3 723,691 + -0.9 723,692 - +0.2 723,710 + EX31_RS24760 0.16 -0.2 723,710 + EX31_RS24760 0.16 +1.9 723,710 + EX31_RS24760 0.16 +0.3 723,710 + EX31_RS24760 0.16 -0.0 723,711 - EX31_RS24760 0.17 +1.1 723,711 - EX31_RS24760 0.17 -0.1 723,711 - EX31_RS24760 0.17 -1.1 723,711 - EX31_RS24760 0.17 +0.2 723,711 - EX31_RS24760 0.17 -0.4 723,711 - EX31_RS24760 0.17 +0.7 723,711 - EX31_RS24760 0.17 +2.3 723,711 - EX31_RS24760 0.17 +0.9 723,711 - EX31_RS24760 0.17 +0.3 723,711 - EX31_RS24760 0.17 +0.1 723,711 - EX31_RS24760 0.17 +0.0 723,751 + EX31_RS24760 0.34 -0.9 723,751 + EX31_RS24760 0.34 -0.1 723,752 - EX31_RS24760 0.35 +0.7 723,811 + EX31_RS24760 0.60 +1.7 723,812 - EX31_RS24760 0.61 +0.3 723,812 - EX31_RS24760 0.61 +0.9 723,812 - EX31_RS24760 0.61 -0.7 723,812 - EX31_RS24760 0.61 +0.1 723,812 - EX31_RS24760 0.61 -0.0 723,858 - EX31_RS24760 0.81 -0.3 723,858 - EX31_RS24760 0.81 -0.3 723,902 + +1.4 723,937 - +0.1 723,937 - +0.1 723,978 + -2.3 723,979 - +0.3 723,979 - +0.7 723,979 - +0.8 723,979 - -0.4 724,012 + +0.6 724,013 - +0.6 724,053 - +0.2 724,076 + -0.1 724,119 + +0.4 724,229 - -0.2 724,229 - +0.1 724,285 + -0.9 724,338 + -0.6 724,376 + EX31_RS24765 0.13 -2.1 724,486 + EX31_RS24765 0.35 +0.2 724,579 + EX31_RS24765 0.53 -1.9 724,580 - EX31_RS24765 0.53 +1.0 724,675 + EX31_RS24765 0.72 -1.5 724,675 + EX31_RS24765 0.72 -1.8 724,814 - +0.1 724,922 + -0.9 724,922 + +0.3 724,924 + +0.3 725,023 - EX31_RS24770 0.17 +0.1 725,088 - EX31_RS24770 0.34 +0.9 725,221 - EX31_RS24770 0.69 +0.2 725,221 - EX31_RS24770 0.69 +0.1 725,221 - EX31_RS24770 0.69 -0.4 725,266 + EX31_RS24770 0.80 +1.7 725,266 + EX31_RS24770 0.80 -0.7 725,266 + EX31_RS24770 0.80 -1.0 725,267 - EX31_RS24770 0.81 +0.6 725,267 - EX31_RS24770 0.81 +3.7 725,328 + -0.9 725,329 - -1.3 725,527 - EX31_RS24775 0.21 +0.6 725,604 - EX31_RS24775 0.29 -0.1 725,639 + EX31_RS24775 0.33 +0.4 725,640 - EX31_RS24775 0.33 +0.7
Or see this region's nucleotide sequence