Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02780 and ABID97_RS02785 overlap by 4 nucleotides ABID97_RS02785 and ABID97_RS02790 are separated by 12 nucleotides
ABID97_RS02780: ABID97_RS02780 - cell envelope integrity protein CreD, at 567,059 to 568,477
_RS02780
ABID97_RS02785: ABID97_RS02785 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 568,474 to 569,766
_RS02785
ABID97_RS02790: ABID97_RS02790 - penicillin-binding protein 1A, at 569,779 to 572,184
_RS02790
Position (kb) 568
569
570 Strain fitness (log2 ratio) -2
-1
0
1 at 568.254 kb on - strand, within ABID97_RS02780 at 568.254 kb on - strand, within ABID97_RS02780 at 568.305 kb on - strand, within ABID97_RS02780 at 568.433 kb on + strand at 569.087 kb on - strand, within ABID97_RS02785 at 569.087 kb on - strand, within ABID97_RS02785 at 569.087 kb on - strand, within ABID97_RS02785 at 569.579 kb on - strand, within ABID97_RS02785 at 569.662 kb on + strand at 569.662 kb on + strand at 569.662 kb on + strand at 569.662 kb on + strand at 569.662 kb on + strand at 569.663 kb on - strand at 569.938 kb on + strand at 569.975 kb on - strand at 570.002 kb on - strand at 570.002 kb on - strand at 570.121 kb on + strand, within ABID97_RS02790 at 570.121 kb on + strand, within ABID97_RS02790 at 570.121 kb on + strand, within ABID97_RS02790 at 570.122 kb on - strand, within ABID97_RS02790 at 570.143 kb on - strand, within ABID97_RS02790 at 570.143 kb on - strand, within ABID97_RS02790 at 570.271 kb on + strand, within ABID97_RS02790 at 570.271 kb on + strand, within ABID97_RS02790 at 570.278 kb on + strand, within ABID97_RS02790 at 570.335 kb on - strand, within ABID97_RS02790 at 570.349 kb on + strand, within ABID97_RS02790 at 570.350 kb on - strand, within ABID97_RS02790 at 570.517 kb on + strand, within ABID97_RS02790 at 570.517 kb on + strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.518 kb on - strand, within ABID97_RS02790 at 570.634 kb on + strand, within ABID97_RS02790 at 570.634 kb on + strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.635 kb on - strand, within ABID97_RS02790 at 570.664 kb on + strand, within ABID97_RS02790 at 570.688 kb on + strand, within ABID97_RS02790 at 570.688 kb on + strand, within ABID97_RS02790 at 570.688 kb on + strand, within ABID97_RS02790 at 570.689 kb on - strand, within ABID97_RS02790 at 570.745 kb on + strand, within ABID97_RS02790 at 570.745 kb on + strand, within ABID97_RS02790 at 570.745 kb on + strand, within ABID97_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 568,254 - ABID97_RS02780 0.84 +0.3 568,254 - ABID97_RS02780 0.84 +0.3 568,305 - ABID97_RS02780 0.88 +0.5 568,433 + -0.1 569,087 - ABID97_RS02785 0.47 -0.8 569,087 - ABID97_RS02785 0.47 -0.7 569,087 - ABID97_RS02785 0.47 -0.0 569,579 - ABID97_RS02785 0.85 -0.2 569,662 + +1.3 569,662 + +0.5 569,662 + -0.3 569,662 + -0.4 569,662 + -0.4 569,663 - -0.6 569,938 + +0.5 569,975 - -0.5 570,002 - +0.2 570,002 - -0.7 570,121 + ABID97_RS02790 0.14 -0.4 570,121 + ABID97_RS02790 0.14 -0.4 570,121 + ABID97_RS02790 0.14 +0.9 570,122 - ABID97_RS02790 0.14 -0.9 570,143 - ABID97_RS02790 0.15 -0.4 570,143 - ABID97_RS02790 0.15 -0.1 570,271 + ABID97_RS02790 0.20 -0.5 570,271 + ABID97_RS02790 0.20 +1.1 570,278 + ABID97_RS02790 0.21 -0.1 570,335 - ABID97_RS02790 0.23 -0.3 570,349 + ABID97_RS02790 0.24 -0.2 570,350 - ABID97_RS02790 0.24 -0.2 570,517 + ABID97_RS02790 0.31 -1.1 570,517 + ABID97_RS02790 0.31 -0.1 570,518 - ABID97_RS02790 0.31 -0.2 570,518 - ABID97_RS02790 0.31 -0.1 570,518 - ABID97_RS02790 0.31 +0.2 570,518 - ABID97_RS02790 0.31 -0.3 570,518 - ABID97_RS02790 0.31 -2.7 570,518 - ABID97_RS02790 0.31 +0.9 570,518 - ABID97_RS02790 0.31 -0.2 570,518 - ABID97_RS02790 0.31 -0.6 570,634 + ABID97_RS02790 0.36 -0.1 570,634 + ABID97_RS02790 0.36 -0.4 570,635 - ABID97_RS02790 0.36 -0.2 570,635 - ABID97_RS02790 0.36 -0.2 570,635 - ABID97_RS02790 0.36 -0.1 570,635 - ABID97_RS02790 0.36 -0.2 570,664 + ABID97_RS02790 0.37 -0.5 570,688 + ABID97_RS02790 0.38 -0.4 570,688 + ABID97_RS02790 0.38 -0.3 570,688 + ABID97_RS02790 0.38 +0.9 570,689 - ABID97_RS02790 0.38 -0.2 570,745 + ABID97_RS02790 0.40 -0.2 570,745 + ABID97_RS02790 0.40 +0.5 570,745 + ABID97_RS02790 0.40 +0.3
Or see this region's nucleotide sequence