Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07130

Experiment: 150_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07125 and AMB_RS07130 overlap by 29 nucleotidesAMB_RS07130 and AMB_RS23730 are separated by 59 nucleotides AMB_RS07125: AMB_RS07125 - cytochrome CBB3, at 1,531,549 to 1,533,186 _RS07125 AMB_RS07130: AMB_RS07130 - alpha/beta hydrolase, at 1,533,158 to 1,533,850 _RS07130 AMB_RS23730: AMB_RS23730 - PAS domain S-box protein, at 1,533,910 to 1,536,231 _RS23730 Position (kb) 1533 1534Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1532.167 kb on + strand, within AMB_RS07125at 1532.168 kb on - strand, within AMB_RS07125at 1532.168 kb on - strand, within AMB_RS07125at 1532.168 kb on - strand, within AMB_RS07125at 1532.200 kb on + strand, within AMB_RS07125at 1532.200 kb on + strand, within AMB_RS07125at 1532.200 kb on + strand, within AMB_RS07125at 1532.200 kb on + strand, within AMB_RS07125at 1532.201 kb on - strand, within AMB_RS07125at 1532.201 kb on - strand, within AMB_RS07125at 1532.201 kb on - strand, within AMB_RS07125at 1532.209 kb on + strand, within AMB_RS07125at 1532.209 kb on + strand, within AMB_RS07125at 1532.209 kb on + strand, within AMB_RS07125at 1532.209 kb on + strand, within AMB_RS07125at 1532.210 kb on - strand, within AMB_RS07125at 1532.210 kb on - strand, within AMB_RS07125at 1532.210 kb on - strand, within AMB_RS07125at 1532.210 kb on - strand, within AMB_RS07125at 1532.210 kb on - strand, within AMB_RS07125at 1532.314 kb on - strand, within AMB_RS07125at 1532.408 kb on - strand, within AMB_RS07125at 1532.408 kb on - strand, within AMB_RS07125at 1532.521 kb on + strand, within AMB_RS07125at 1532.521 kb on + strand, within AMB_RS07125at 1532.522 kb on - strand, within AMB_RS07125at 1532.623 kb on + strand, within AMB_RS07125at 1532.623 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.767 kb on + strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.768 kb on - strand, within AMB_RS07125at 1532.893 kb on + strand, within AMB_RS07125at 1533.139 kb on + strandat 1533.139 kb on + strandat 1533.139 kb on + strandat 1533.140 kb on - strandat 1533.140 kb on - strandat 1533.140 kb on - strandat 1533.140 kb on - strandat 1533.163 kb on + strandat 1533.163 kb on + strandat 1533.163 kb on + strandat 1533.164 kb on - strandat 1533.285 kb on + strand, within AMB_RS07130at 1533.429 kb on + strand, within AMB_RS07130at 1533.430 kb on - strand, within AMB_RS07130at 1533.430 kb on - strand, within AMB_RS07130at 1533.594 kb on + strand, within AMB_RS07130at 1533.595 kb on - strand, within AMB_RS07130at 1533.759 kb on + strand, within AMB_RS07130at 1533.810 kb on - strandat 1533.810 kb on - strandat 1533.885 kb on + strandat 1533.934 kb on - strandat 1534.264 kb on + strand, within AMB_RS23730at 1534.264 kb on + strand, within AMB_RS23730at 1534.264 kb on + strand, within AMB_RS23730at 1534.264 kb on + strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.265 kb on - strand, within AMB_RS23730at 1534.357 kb on + strand, within AMB_RS23730at 1534.358 kb on - strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.459 kb on + strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.460 kb on - strand, within AMB_RS23730at 1534.511 kb on - strand, within AMB_RS23730at 1534.528 kb on + strand, within AMB_RS23730at 1534.528 kb on + strand, within AMB_RS23730at 1534.528 kb on + strand, within AMB_RS23730at 1534.529 kb on - strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.570 kb on + strand, within AMB_RS23730at 1534.571 kb on - strand, within AMB_RS23730at 1534.619 kb on - strand, within AMB_RS23730at 1534.619 kb on - strand, within AMB_RS23730at 1534.703 kb on - strand, within AMB_RS23730

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_nonmag_2
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1,532,167 + AMB_RS07125 0.38 +0.2
1,532,168 - AMB_RS07125 0.38 -4.6
1,532,168 - AMB_RS07125 0.38 +3.0
1,532,168 - AMB_RS07125 0.38 +0.2
1,532,200 + AMB_RS07125 0.40 +0.0
1,532,200 + AMB_RS07125 0.40 -0.6
1,532,200 + AMB_RS07125 0.40 -2.5
1,532,200 + AMB_RS07125 0.40 -1.0
1,532,201 - AMB_RS07125 0.40 -0.0
1,532,201 - AMB_RS07125 0.40 -1.6
1,532,201 - AMB_RS07125 0.40 -1.6
1,532,209 + AMB_RS07125 0.40 -1.7
1,532,209 + AMB_RS07125 0.40 -0.3
1,532,209 + AMB_RS07125 0.40 +1.7
1,532,209 + AMB_RS07125 0.40 +1.3
1,532,210 - AMB_RS07125 0.40 +0.7
1,532,210 - AMB_RS07125 0.40 -1.6
1,532,210 - AMB_RS07125 0.40 +0.8
1,532,210 - AMB_RS07125 0.40 -3.5
1,532,210 - AMB_RS07125 0.40 -2.2
1,532,314 - AMB_RS07125 0.47 -3.1
1,532,408 - AMB_RS07125 0.52 -2.2
1,532,408 - AMB_RS07125 0.52 -0.2
1,532,521 + AMB_RS07125 0.59 -0.4
1,532,521 + AMB_RS07125 0.59 +0.1
1,532,522 - AMB_RS07125 0.59 +1.7
1,532,623 + AMB_RS07125 0.66 -0.6
1,532,623 + AMB_RS07125 0.66 -3.2
1,532,767 + AMB_RS07125 0.74 -0.4
1,532,767 + AMB_RS07125 0.74 +0.1
1,532,767 + AMB_RS07125 0.74 +1.0
1,532,767 + AMB_RS07125 0.74 +0.4
1,532,767 + AMB_RS07125 0.74 -3.7
1,532,767 + AMB_RS07125 0.74 -1.1
1,532,767 + AMB_RS07125 0.74 -3.9
1,532,767 + AMB_RS07125 0.74 -3.0
1,532,767 + AMB_RS07125 0.74 -2.2
1,532,767 + AMB_RS07125 0.74 -0.5
1,532,767 + AMB_RS07125 0.74 -0.0
1,532,767 + AMB_RS07125 0.74 -0.7
1,532,768 - AMB_RS07125 0.74 +1.1
1,532,768 - AMB_RS07125 0.74 +1.2
1,532,768 - AMB_RS07125 0.74 -0.4
1,532,768 - AMB_RS07125 0.74 +2.3
1,532,768 - AMB_RS07125 0.74 +0.7
1,532,768 - AMB_RS07125 0.74 -0.4
1,532,768 - AMB_RS07125 0.74 +0.9
1,532,768 - AMB_RS07125 0.74 +1.1
1,532,768 - AMB_RS07125 0.74 -1.4
1,532,768 - AMB_RS07125 0.74 -0.6
1,532,768 - AMB_RS07125 0.74 -1.6
1,532,768 - AMB_RS07125 0.74 -0.8
1,532,893 + AMB_RS07125 0.82 +0.8
1,533,139 + +0.2
1,533,139 + +0.5
1,533,139 + -2.6
1,533,140 - -5.5
1,533,140 - +1.2
1,533,140 - +0.5
1,533,140 - +0.6
1,533,163 + -0.3
1,533,163 + +0.6
1,533,163 + -2.5
1,533,164 - -2.7
1,533,285 + AMB_RS07130 0.18 -2.5
1,533,429 + AMB_RS07130 0.39 +0.4
1,533,430 - AMB_RS07130 0.39 -2.5
1,533,430 - AMB_RS07130 0.39 -3.7
1,533,594 + AMB_RS07130 0.63 -2.6
1,533,595 - AMB_RS07130 0.63 -2.1
1,533,759 + AMB_RS07130 0.87 -4.0
1,533,810 - -2.7
1,533,810 - -0.4
1,533,885 + -0.8
1,533,934 - -0.2
1,534,264 + AMB_RS23730 0.15 -3.1
1,534,264 + AMB_RS23730 0.15 -3.2
1,534,264 + AMB_RS23730 0.15 -2.4
1,534,264 + AMB_RS23730 0.15 -1.0
1,534,265 - AMB_RS23730 0.15 -2.4
1,534,265 - AMB_RS23730 0.15 -2.5
1,534,265 - AMB_RS23730 0.15 -3.9
1,534,265 - AMB_RS23730 0.15 +0.2
1,534,265 - AMB_RS23730 0.15 +0.0
1,534,357 + AMB_RS23730 0.19 -2.6
1,534,358 - AMB_RS23730 0.19 -3.4
1,534,459 + AMB_RS23730 0.24 -0.0
1,534,459 + AMB_RS23730 0.24 +1.7
1,534,459 + AMB_RS23730 0.24 -0.2
1,534,459 + AMB_RS23730 0.24 -1.9
1,534,459 + AMB_RS23730 0.24 -0.4
1,534,459 + AMB_RS23730 0.24 +1.6
1,534,460 - AMB_RS23730 0.24 -4.6
1,534,460 - AMB_RS23730 0.24 -0.5
1,534,460 - AMB_RS23730 0.24 +0.5
1,534,460 - AMB_RS23730 0.24 +1.2
1,534,460 - AMB_RS23730 0.24 +0.9
1,534,460 - AMB_RS23730 0.24 +0.1
1,534,460 - AMB_RS23730 0.24 -2.5
1,534,460 - AMB_RS23730 0.24 -1.4
1,534,460 - AMB_RS23730 0.24 -0.1
1,534,511 - AMB_RS23730 0.26 -0.6
1,534,528 + AMB_RS23730 0.27 -0.3
1,534,528 + AMB_RS23730 0.27 +1.4
1,534,528 + AMB_RS23730 0.27 +1.7
1,534,529 - AMB_RS23730 0.27 +0.0
1,534,570 + AMB_RS23730 0.28 +2.8
1,534,570 + AMB_RS23730 0.28 +0.0
1,534,570 + AMB_RS23730 0.28 +0.2
1,534,570 + AMB_RS23730 0.28 -0.6
1,534,571 - AMB_RS23730 0.28 +0.1
1,534,619 - AMB_RS23730 0.31 +0.2
1,534,619 - AMB_RS23730 0.31 +0.5
1,534,703 - AMB_RS23730 0.34 -1.2

Or see this region's nucleotide sequence