Experiment: Cobalt chloride 80 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_01320 and IAI46_01325 are separated by 337 nucleotides IAI46_01325 and IAI46_01330 are separated by 99 nucleotides IAI46_01330 and IAI46_01335 are separated by 40 nucleotides
IAI46_01320: IAI46_01320 - phosphomethylpyrimidine synthase ThiC, at 289,828 to 291,711
_01320
IAI46_01325: IAI46_01325 - Rsd/AlgQ family anti-sigma factor, at 292,049 to 292,552
_01325
IAI46_01330: IAI46_01330 - NAD(+) diphosphatase, at 292,652 to 293,419
_01330
IAI46_01335: IAI46_01335 - uroporphyrinogen decarboxylase, at 293,460 to 294,524
_01335
Position (kb) 292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 291.665 kb on + strand at 291.741 kb on + strand at 291.771 kb on + strand at 291.771 kb on + strand at 291.771 kb on + strand at 291.772 kb on - strand at 291.782 kb on + strand at 291.831 kb on + strand at 291.831 kb on + strand at 291.831 kb on + strand at 291.832 kb on - strand at 291.832 kb on - strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.894 kb on + strand at 291.894 kb on + strand at 291.894 kb on + strand at 291.895 kb on - strand at 291.895 kb on - strand at 291.915 kb on + strand at 291.990 kb on + strand at 292.017 kb on - strand at 292.017 kb on - strand at 292.017 kb on - strand at 292.017 kb on - strand at 292.018 kb on + strand at 292.018 kb on + strand at 292.018 kb on + strand at 292.018 kb on + strand at 292.019 kb on - strand at 292.120 kb on + strand, within IAI46_01325 at 292.121 kb on - strand, within IAI46_01325 at 292.121 kb on - strand, within IAI46_01325 at 292.217 kb on - strand, within IAI46_01325 at 292.218 kb on + strand, within IAI46_01325 at 292.218 kb on + strand, within IAI46_01325 at 292.218 kb on + strand, within IAI46_01325 at 292.237 kb on + strand, within IAI46_01325 at 292.270 kb on - strand, within IAI46_01325 at 292.325 kb on - strand, within IAI46_01325 at 292.335 kb on + strand, within IAI46_01325 at 292.335 kb on + strand, within IAI46_01325 at 292.335 kb on + strand, within IAI46_01325 at 292.335 kb on + strand, within IAI46_01325 at 292.336 kb on - strand, within IAI46_01325 at 292.336 kb on - strand, within IAI46_01325 at 292.336 kb on - strand, within IAI46_01325 at 292.362 kb on + strand, within IAI46_01325 at 292.375 kb on + strand, within IAI46_01325 at 292.375 kb on + strand, within IAI46_01325 at 292.414 kb on + strand, within IAI46_01325 at 292.414 kb on + strand, within IAI46_01325 at 292.415 kb on - strand, within IAI46_01325 at 292.415 kb on - strand, within IAI46_01325 at 292.427 kb on - strand, within IAI46_01325 at 292.438 kb on + strand, within IAI46_01325 at 292.500 kb on - strand, within IAI46_01325 at 292.500 kb on - strand, within IAI46_01325 at 292.507 kb on + strand at 292.507 kb on + strand at 292.508 kb on - strand at 292.508 kb on - strand at 292.510 kb on + strand at 292.511 kb on - strand at 292.511 kb on - strand at 292.569 kb on - strand at 292.941 kb on - strand, within IAI46_01330 at 292.941 kb on - strand, within IAI46_01330 at 292.950 kb on - strand, within IAI46_01330 at 293.114 kb on - strand, within IAI46_01330 at 293.188 kb on + strand, within IAI46_01330 at 293.189 kb on - strand, within IAI46_01330 at 293.191 kb on + strand, within IAI46_01330 at 293.263 kb on + strand, within IAI46_01330 at 293.264 kb on - strand, within IAI46_01330 at 293.273 kb on + strand, within IAI46_01330 at 293.328 kb on - strand, within IAI46_01330 at 293.398 kb on - strand at 293.398 kb on - strand at 293.403 kb on + strand at 293.403 kb on + strand at 293.417 kb on + strand at 293.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 80 uM, aerobic remove 291,665 + -0.7 291,741 + -0.1 291,771 + +0.5 291,771 + -0.2 291,771 + +0.8 291,772 - +0.0 291,782 + -0.6 291,831 + -0.2 291,831 + -0.1 291,831 + -3.0 291,832 - -1.9 291,832 - +0.1 291,889 + +0.2 291,889 + -0.1 291,890 - +0.8 291,890 - +0.2 291,894 + +0.7 291,894 + +1.6 291,894 + +1.2 291,895 - +0.1 291,895 - -0.1 291,915 + +0.2 291,990 + +0.4 292,017 - -0.1 292,017 - +0.1 292,017 - -0.3 292,017 - -0.2 292,018 + +0.2 292,018 + -0.4 292,018 + +0.5 292,018 + +0.8 292,019 - -0.3 292,120 + IAI46_01325 0.14 -0.3 292,121 - IAI46_01325 0.14 -0.0 292,121 - IAI46_01325 0.14 -0.0 292,217 - IAI46_01325 0.33 +0.4 292,218 + IAI46_01325 0.34 -0.5 292,218 + IAI46_01325 0.34 -0.8 292,218 + IAI46_01325 0.34 -0.2 292,237 + IAI46_01325 0.37 -1.5 292,270 - IAI46_01325 0.44 -0.6 292,325 - IAI46_01325 0.55 +0.2 292,335 + IAI46_01325 0.57 +0.1 292,335 + IAI46_01325 0.57 -0.4 292,335 + IAI46_01325 0.57 -0.7 292,335 + IAI46_01325 0.57 -0.6 292,336 - IAI46_01325 0.57 -0.3 292,336 - IAI46_01325 0.57 +0.6 292,336 - IAI46_01325 0.57 +0.3 292,362 + IAI46_01325 0.62 -0.5 292,375 + IAI46_01325 0.65 -0.4 292,375 + IAI46_01325 0.65 -0.3 292,414 + IAI46_01325 0.72 -0.3 292,414 + IAI46_01325 0.72 -0.0 292,415 - IAI46_01325 0.73 -1.1 292,415 - IAI46_01325 0.73 +0.7 292,427 - IAI46_01325 0.75 +1.0 292,438 + IAI46_01325 0.77 -1.0 292,500 - IAI46_01325 0.89 +0.2 292,500 - IAI46_01325 0.89 +0.7 292,507 + -0.5 292,507 + -0.0 292,508 - -0.3 292,508 - +0.1 292,510 + +1.8 292,511 - +0.5 292,511 - +0.7 292,569 - +1.5 292,941 - IAI46_01330 0.38 +0.7 292,941 - IAI46_01330 0.38 +0.5 292,950 - IAI46_01330 0.39 +0.5 293,114 - IAI46_01330 0.60 +0.5 293,188 + IAI46_01330 0.70 +0.6 293,189 - IAI46_01330 0.70 +0.3 293,191 + IAI46_01330 0.70 +0.1 293,263 + IAI46_01330 0.80 +1.4 293,264 - IAI46_01330 0.80 +0.4 293,273 + IAI46_01330 0.81 +0.9 293,328 - IAI46_01330 0.88 +0.1 293,398 - -1.0 293,398 - +0.8 293,403 + +0.2 293,403 + +0.6 293,417 + +1.5 293,430 + +1.3
Or see this region's nucleotide sequence