Strain Fitness in Rahnella sp. WP5 around EX31_RS18615

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18610 and EX31_RS18615 are separated by 156 nucleotidesEX31_RS18615 and EX31_RS18620 are separated by 22 nucleotidesEX31_RS18620 and EX31_RS18625 overlap by 4 nucleotides EX31_RS18610: EX31_RS18610 - SDR family oxidoreductase, at 301,229 to 302,683 _RS18610 EX31_RS18615: EX31_RS18615 - NAD(P)-dependent oxidoreductase, at 302,840 to 303,874 _RS18615 EX31_RS18620: EX31_RS18620 - N-acetylmuramoyl-L-alanine amidase, at 303,897 to 304,745 _RS18620 EX31_RS18625: EX31_RS18625 - heavy metal-binding domain-containing protein, at 304,742 to 305,068 _RS18625 Position (kb) 302 303 304Strain fitness (log2 ratio) -2 -1 0 1 2at 301.874 kb on + strand, within EX31_RS18610at 301.874 kb on + strand, within EX31_RS18610at 301.875 kb on - strand, within EX31_RS18610at 301.875 kb on - strand, within EX31_RS18610at 301.875 kb on - strand, within EX31_RS18610at 301.875 kb on - strand, within EX31_RS18610at 301.875 kb on - strand, within EX31_RS18610at 301.883 kb on + strand, within EX31_RS18610at 301.884 kb on - strand, within EX31_RS18610at 301.973 kb on + strand, within EX31_RS18610at 301.974 kb on - strand, within EX31_RS18610at 301.974 kb on - strand, within EX31_RS18610at 302.046 kb on + strand, within EX31_RS18610at 302.119 kb on + strand, within EX31_RS18610at 302.119 kb on + strand, within EX31_RS18610at 302.120 kb on - strand, within EX31_RS18610at 302.210 kb on + strand, within EX31_RS18610at 302.211 kb on - strand, within EX31_RS18610at 302.211 kb on - strand, within EX31_RS18610at 302.211 kb on - strand, within EX31_RS18610at 302.265 kb on + strand, within EX31_RS18610at 302.265 kb on + strand, within EX31_RS18610at 302.266 kb on - strand, within EX31_RS18610at 302.309 kb on + strand, within EX31_RS18610at 302.310 kb on - strand, within EX31_RS18610at 302.352 kb on + strand, within EX31_RS18610at 302.373 kb on - strand, within EX31_RS18610at 302.596 kb on + strandat 302.597 kb on - strandat 302.682 kb on - strandat 302.695 kb on + strandat 302.695 kb on + strandat 302.696 kb on - strandat 302.696 kb on - strandat 302.819 kb on + strandat 302.819 kb on + strandat 302.819 kb on + strandat 302.837 kb on + strandat 302.837 kb on + strandat 302.839 kb on + strandat 302.839 kb on + strandat 302.839 kb on + strandat 302.905 kb on + strandat 302.980 kb on + strand, within EX31_RS18615at 303.043 kb on + strand, within EX31_RS18615at 303.149 kb on + strand, within EX31_RS18615at 303.149 kb on + strand, within EX31_RS18615at 303.150 kb on - strand, within EX31_RS18615at 303.172 kb on + strand, within EX31_RS18615at 303.172 kb on + strand, within EX31_RS18615at 303.172 kb on + strand, within EX31_RS18615at 303.192 kb on - strand, within EX31_RS18615at 303.192 kb on - strand, within EX31_RS18615at 303.404 kb on + strand, within EX31_RS18615at 303.404 kb on + strand, within EX31_RS18615at 303.405 kb on - strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.458 kb on + strand, within EX31_RS18615at 303.459 kb on - strand, within EX31_RS18615at 303.459 kb on - strand, within EX31_RS18615at 303.459 kb on - strand, within EX31_RS18615at 303.532 kb on + strand, within EX31_RS18615at 303.533 kb on - strand, within EX31_RS18615at 303.535 kb on + strand, within EX31_RS18615at 303.535 kb on + strand, within EX31_RS18615at 303.535 kb on + strand, within EX31_RS18615at 303.536 kb on - strand, within EX31_RS18615at 303.562 kb on + strand, within EX31_RS18615at 303.562 kb on + strand, within EX31_RS18615at 303.562 kb on + strand, within EX31_RS18615at 303.563 kb on - strand, within EX31_RS18615at 303.563 kb on - strand, within EX31_RS18615at 303.602 kb on + strand, within EX31_RS18615at 303.603 kb on - strand, within EX31_RS18615at 303.638 kb on - strand, within EX31_RS18615at 303.701 kb on + strand, within EX31_RS18615at 303.702 kb on - strand, within EX31_RS18615at 303.702 kb on - strand, within EX31_RS18615at 303.702 kb on - strand, within EX31_RS18615at 303.767 kb on + strand, within EX31_RS18615at 303.832 kb on + strandat 303.833 kb on - strandat 303.878 kb on + strandat 303.878 kb on + strandat 303.878 kb on + strandat 303.879 kb on - strandat 303.924 kb on + strandat 304.037 kb on + strand, within EX31_RS18620at 304.037 kb on + strand, within EX31_RS18620at 304.037 kb on + strand, within EX31_RS18620at 304.038 kb on - strand, within EX31_RS18620at 304.038 kb on - strand, within EX31_RS18620at 304.040 kb on + strand, within EX31_RS18620at 304.061 kb on - strand, within EX31_RS18620at 304.113 kb on - strand, within EX31_RS18620at 304.261 kb on - strand, within EX31_RS18620at 304.302 kb on + strand, within EX31_RS18620at 304.303 kb on - strand, within EX31_RS18620at 304.303 kb on - strand, within EX31_RS18620at 304.308 kb on + strand, within EX31_RS18620at 304.308 kb on + strand, within EX31_RS18620at 304.331 kb on - strand, within EX31_RS18620at 304.351 kb on + strand, within EX31_RS18620at 304.351 kb on + strand, within EX31_RS18620at 304.352 kb on - strand, within EX31_RS18620at 304.352 kb on - strand, within EX31_RS18620at 304.352 kb on - strand, within EX31_RS18620at 304.352 kb on - strand, within EX31_RS18620at 304.352 kb on - strand, within EX31_RS18620at 304.352 kb on - strand, within EX31_RS18620at 304.360 kb on + strand, within EX31_RS18620at 304.361 kb on - strand, within EX31_RS18620at 304.394 kb on + strand, within EX31_RS18620at 304.394 kb on + strand, within EX31_RS18620at 304.395 kb on - strand, within EX31_RS18620at 304.452 kb on - strand, within EX31_RS18620at 304.519 kb on + strand, within EX31_RS18620at 304.519 kb on + strand, within EX31_RS18620at 304.520 kb on - strand, within EX31_RS18620at 304.520 kb on - strand, within EX31_RS18620at 304.520 kb on - strand, within EX31_RS18620at 304.520 kb on - strand, within EX31_RS18620at 304.520 kb on - strand, within EX31_RS18620at 304.520 kb on - strand, within EX31_RS18620at 304.551 kb on - strand, within EX31_RS18620at 304.551 kb on - strand, within EX31_RS18620at 304.551 kb on - strand, within EX31_RS18620at 304.551 kb on - strand, within EX31_RS18620at 304.554 kb on + strand, within EX31_RS18620at 304.554 kb on + strand, within EX31_RS18620at 304.582 kb on + strand, within EX31_RS18620at 304.582 kb on + strand, within EX31_RS18620at 304.582 kb on + strand, within EX31_RS18620at 304.583 kb on - strand, within EX31_RS18620at 304.702 kb on - strandat 304.826 kb on - strand, within EX31_RS18625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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301,874 + EX31_RS18610 0.44 -0.6
301,874 + EX31_RS18610 0.44 -1.8
301,875 - EX31_RS18610 0.44 -0.6
301,875 - EX31_RS18610 0.44 -0.5
301,875 - EX31_RS18610 0.44 -0.4
301,875 - EX31_RS18610 0.44 -0.0
301,875 - EX31_RS18610 0.44 +0.5
301,883 + EX31_RS18610 0.45 +0.0
301,884 - EX31_RS18610 0.45 +0.4
301,973 + EX31_RS18610 0.51 -1.2
301,974 - EX31_RS18610 0.51 -1.9
301,974 - EX31_RS18610 0.51 +0.8
302,046 + EX31_RS18610 0.56 +0.2
302,119 + EX31_RS18610 0.61 +1.2
302,119 + EX31_RS18610 0.61 +0.9
302,120 - EX31_RS18610 0.61 -0.3
302,210 + EX31_RS18610 0.67 +0.4
302,211 - EX31_RS18610 0.67 -0.4
302,211 - EX31_RS18610 0.67 +0.5
302,211 - EX31_RS18610 0.67 -0.7
302,265 + EX31_RS18610 0.71 +0.7
302,265 + EX31_RS18610 0.71 +0.6
302,266 - EX31_RS18610 0.71 +0.5
302,309 + EX31_RS18610 0.74 +0.4
302,310 - EX31_RS18610 0.74 +1.2
302,352 + EX31_RS18610 0.77 +0.5
302,373 - EX31_RS18610 0.79 -0.7
302,596 + -1.5
302,597 - -0.9
302,682 - -0.4
302,695 + +0.2
302,695 + +0.0
302,696 - +0.8
302,696 - +1.4
302,819 + +0.2
302,819 + +0.7
302,819 + +0.3
302,837 + -0.3
302,837 + -0.4
302,839 + -0.8
302,839 + -0.3
302,839 + +0.7
302,905 + +0.7
302,980 + EX31_RS18615 0.14 -0.4
303,043 + EX31_RS18615 0.20 -1.0
303,149 + EX31_RS18615 0.30 +0.4
303,149 + EX31_RS18615 0.30 -0.4
303,150 - EX31_RS18615 0.30 -0.5
303,172 + EX31_RS18615 0.32 +0.9
303,172 + EX31_RS18615 0.32 -0.3
303,172 + EX31_RS18615 0.32 -0.3
303,192 - EX31_RS18615 0.34 -0.9
303,192 - EX31_RS18615 0.34 -0.2
303,404 + EX31_RS18615 0.54 +0.6
303,404 + EX31_RS18615 0.54 +0.7
303,405 - EX31_RS18615 0.55 -0.2
303,458 + EX31_RS18615 0.60 -0.3
303,458 + EX31_RS18615 0.60 +0.2
303,458 + EX31_RS18615 0.60 +0.1
303,458 + EX31_RS18615 0.60 -0.4
303,458 + EX31_RS18615 0.60 -0.9
303,458 + EX31_RS18615 0.60 +0.2
303,458 + EX31_RS18615 0.60 -0.6
303,459 - EX31_RS18615 0.60 -2.2
303,459 - EX31_RS18615 0.60 +0.1
303,459 - EX31_RS18615 0.60 +0.1
303,532 + EX31_RS18615 0.67 -0.1
303,533 - EX31_RS18615 0.67 -0.5
303,535 + EX31_RS18615 0.67 -1.8
303,535 + EX31_RS18615 0.67 +1.2
303,535 + EX31_RS18615 0.67 +1.2
303,536 - EX31_RS18615 0.67 +0.1
303,562 + EX31_RS18615 0.70 +0.0
303,562 + EX31_RS18615 0.70 +0.3
303,562 + EX31_RS18615 0.70 -0.1
303,563 - EX31_RS18615 0.70 -0.3
303,563 - EX31_RS18615 0.70 +1.0
303,602 + EX31_RS18615 0.74 -0.1
303,603 - EX31_RS18615 0.74 -0.8
303,638 - EX31_RS18615 0.77 +0.8
303,701 + EX31_RS18615 0.83 -0.3
303,702 - EX31_RS18615 0.83 +0.4
303,702 - EX31_RS18615 0.83 -1.6
303,702 - EX31_RS18615 0.83 +0.0
303,767 + EX31_RS18615 0.90 +0.2
303,832 + -0.2
303,833 - -1.9
303,878 + -0.2
303,878 + -1.8
303,878 + -1.3
303,879 - +1.4
303,924 + -1.6
304,037 + EX31_RS18620 0.16 +0.0
304,037 + EX31_RS18620 0.16 +2.7
304,037 + EX31_RS18620 0.16 -0.5
304,038 - EX31_RS18620 0.17 +0.1
304,038 - EX31_RS18620 0.17 -1.1
304,040 + EX31_RS18620 0.17 -0.1
304,061 - EX31_RS18620 0.19 -0.5
304,113 - EX31_RS18620 0.25 -0.1
304,261 - EX31_RS18620 0.43 -1.0
304,302 + EX31_RS18620 0.48 -0.5
304,303 - EX31_RS18620 0.48 +0.7
304,303 - EX31_RS18620 0.48 +1.2
304,308 + EX31_RS18620 0.48 +1.8
304,308 + EX31_RS18620 0.48 -1.8
304,331 - EX31_RS18620 0.51 -0.7
304,351 + EX31_RS18620 0.53 +0.3
304,351 + EX31_RS18620 0.53 +0.4
304,352 - EX31_RS18620 0.54 -0.6
304,352 - EX31_RS18620 0.54 -1.1
304,352 - EX31_RS18620 0.54 +0.4
304,352 - EX31_RS18620 0.54 +1.1
304,352 - EX31_RS18620 0.54 +1.2
304,352 - EX31_RS18620 0.54 -0.5
304,360 + EX31_RS18620 0.55 +0.7
304,361 - EX31_RS18620 0.55 -0.5
304,394 + EX31_RS18620 0.59 +0.7
304,394 + EX31_RS18620 0.59 -0.4
304,395 - EX31_RS18620 0.59 +0.4
304,452 - EX31_RS18620 0.65 -0.1
304,519 + EX31_RS18620 0.73 +0.4
304,519 + EX31_RS18620 0.73 -0.4
304,520 - EX31_RS18620 0.73 +0.8
304,520 - EX31_RS18620 0.73 +0.8
304,520 - EX31_RS18620 0.73 +0.0
304,520 - EX31_RS18620 0.73 -0.4
304,520 - EX31_RS18620 0.73 -0.4
304,520 - EX31_RS18620 0.73 -0.2
304,551 - EX31_RS18620 0.77 +0.7
304,551 - EX31_RS18620 0.77 +0.5
304,551 - EX31_RS18620 0.77 +0.4
304,551 - EX31_RS18620 0.77 -1.6
304,554 + EX31_RS18620 0.77 +0.3
304,554 + EX31_RS18620 0.77 +1.2
304,582 + EX31_RS18620 0.81 +0.1
304,582 + EX31_RS18620 0.81 -1.2
304,582 + EX31_RS18620 0.81 +1.1
304,583 - EX31_RS18620 0.81 -2.1
304,702 - -0.9
304,826 - EX31_RS18625 0.26 +0.8

Or see this region's nucleotide sequence