Experiment: Sucrose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07715 and HMPREF1058_RS07710 are separated by 75 nucleotides HMPREF1058_RS07710 and HMPREF1058_RS07705 are separated by 46 nucleotides
HMPREF1058_RS07715: HMPREF1058_RS07715 - porin family protein, at 152,776 to 154,071
_RS07715
HMPREF1058_RS07710: HMPREF1058_RS07710 - ribulose-phosphate 3-epimerase, at 154,147 to 154,800
_RS07710
HMPREF1058_RS07705: HMPREF1058_RS07705 - ComEC/Rec2 family competence protein, at 154,847 to 156,766
_RS07705
Position (kb) 154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 153.333 kb on + strand, within HMPREF1058_RS07715 at 153.673 kb on + strand, within HMPREF1058_RS07715 at 154.093 kb on + strand at 154.103 kb on - strand at 154.132 kb on + strand at 154.511 kb on + strand, within HMPREF1058_RS07710 at 154.779 kb on - strand at 154.822 kb on + strand at 154.823 kb on - strand at 154.861 kb on + strand at 154.861 kb on + strand at 154.869 kb on + strand at 154.968 kb on + strand at 154.968 kb on + strand at 155.081 kb on + strand, within HMPREF1058_RS07705 at 155.105 kb on - strand, within HMPREF1058_RS07705 at 155.109 kb on - strand, within HMPREF1058_RS07705 at 155.172 kb on + strand, within HMPREF1058_RS07705 at 155.224 kb on - strand, within HMPREF1058_RS07705 at 155.224 kb on - strand, within HMPREF1058_RS07705 at 155.228 kb on + strand, within HMPREF1058_RS07705 at 155.228 kb on + strand, within HMPREF1058_RS07705 at 155.228 kb on + strand, within HMPREF1058_RS07705 at 155.228 kb on + strand, within HMPREF1058_RS07705 at 155.228 kb on + strand, within HMPREF1058_RS07705 at 155.229 kb on - strand, within HMPREF1058_RS07705 at 155.285 kb on + strand, within HMPREF1058_RS07705 at 155.287 kb on + strand, within HMPREF1058_RS07705 at 155.294 kb on - strand, within HMPREF1058_RS07705 at 155.535 kb on - strand, within HMPREF1058_RS07705 at 155.570 kb on + strand, within HMPREF1058_RS07705 at 155.593 kb on + strand, within HMPREF1058_RS07705 at 155.617 kb on + strand, within HMPREF1058_RS07705 at 155.619 kb on + strand, within HMPREF1058_RS07705 at 155.620 kb on - strand, within HMPREF1058_RS07705 at 155.620 kb on - strand, within HMPREF1058_RS07705 at 155.702 kb on - strand, within HMPREF1058_RS07705 at 155.757 kb on + strand, within HMPREF1058_RS07705 at 155.777 kb on - strand, within HMPREF1058_RS07705 at 155.777 kb on - strand, within HMPREF1058_RS07705 at 155.777 kb on - strand, within HMPREF1058_RS07705 at 155.781 kb on + strand, within HMPREF1058_RS07705
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 20 mM (C) remove 153,333 + HMPREF1058_RS07715 0.43 +1.4 153,673 + HMPREF1058_RS07715 0.69 -0.7 154,093 + -2.8 154,103 - -2.1 154,132 + +0.3 154,511 + HMPREF1058_RS07710 0.56 -1.8 154,779 - -0.4 154,822 + +0.8 154,823 - -0.3 154,861 + -0.0 154,861 + +0.1 154,869 + +1.6 154,968 + -0.2 154,968 + -1.7 155,081 + HMPREF1058_RS07705 0.12 -0.6 155,105 - HMPREF1058_RS07705 0.13 -0.7 155,109 - HMPREF1058_RS07705 0.14 -0.4 155,172 + HMPREF1058_RS07705 0.17 -0.6 155,224 - HMPREF1058_RS07705 0.20 -0.4 155,224 - HMPREF1058_RS07705 0.20 -0.0 155,228 + HMPREF1058_RS07705 0.20 -2.0 155,228 + HMPREF1058_RS07705 0.20 -0.4 155,228 + HMPREF1058_RS07705 0.20 -0.3 155,228 + HMPREF1058_RS07705 0.20 +1.5 155,228 + HMPREF1058_RS07705 0.20 -2.0 155,229 - HMPREF1058_RS07705 0.20 +0.2 155,285 + HMPREF1058_RS07705 0.23 +1.4 155,287 + HMPREF1058_RS07705 0.23 -1.7 155,294 - HMPREF1058_RS07705 0.23 -0.6 155,535 - HMPREF1058_RS07705 0.36 +1.2 155,570 + HMPREF1058_RS07705 0.38 -2.2 155,593 + HMPREF1058_RS07705 0.39 -0.7 155,617 + HMPREF1058_RS07705 0.40 +0.5 155,619 + HMPREF1058_RS07705 0.40 -0.3 155,620 - HMPREF1058_RS07705 0.40 +0.0 155,620 - HMPREF1058_RS07705 0.40 +1.9 155,702 - HMPREF1058_RS07705 0.45 -1.1 155,757 + HMPREF1058_RS07705 0.47 -0.6 155,777 - HMPREF1058_RS07705 0.48 +0.3 155,777 - HMPREF1058_RS07705 0.48 +1.4 155,777 - HMPREF1058_RS07705 0.48 -0.6 155,781 + HMPREF1058_RS07705 0.49 -2.2
Or see this region's nucleotide sequence